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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Thhalv10006385m |
| Common Name | EUTSA_v10006385mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
bHLH |
| Protein Properties |
Length: 353aa MW: 39429.3 Da PI: 4.7737 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10006385m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 21.1 | 5.8e-07 | 195 | 239 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
n Er+ R++iN+++ +L++llP++ K + + L +A++Y+ Lq
Thhalv10006385m 195 NSPERKERNDINKKMRTLQDLLPNS-----HKDDNESLLDEAINYMTTLQ 239
6779********************8.....699*************9998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010017 | Biological Process | red or far-red light signaling pathway |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MFLPSDDYCC RLTDKEYLEL VFENGQILAK SQRSNGFSQQ NQRTKTIMDL YEAEYNEDFK 60
KSIHDGGFIK NLGETQVVPE HQVVAAYETN MLESNNKHVD ESTLIQTLKA SSSKRIVVDH 120
ENPQIIEFIP PDEQSVVAER SVYSAFDSTD FTEDSGGSSY LSSSLDDESD GGRLRVPEKT 180
GKASVKRRRS KELYNSPERK ERNDINKKMR TLQDLLPNSH KDDNESLLDE AINYMTTLQL 240
QVQMITMGNR FATPAMSLPL GSHYSQMGLA TGMPMSVPQF LPTPFLGAGL PGISHSEDML 300
RFLSHPGLMP IQNSALFTPM ENCLPQSVPP SCAAFPNQIP NLDDARTVGG FLS
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| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Adams E,Diaz C,Hong JP,Shin R
14-3-3 proteins participate in light signaling through association with PHYTOCHROME INTERACTING FACTORs.
Int J Mol Sci, 2014. 15(12): p. 22801-14
[PMID:25501334] - Galvão VC,Collani S,Horrer D,Schmid M
Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana.
Plant J., 2015. 84(5): p. 949-62
[PMID:26466761] - Gomez EJ,Gerhardt K,Judd J,Tabor JJ,Suh J
Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery.
ACS Nano, 2016. 10(1): p. 225-37
[PMID:26618393] - Ochoa-Fernandez R, et al.
Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression.
Methods Mol. Biol., 2016. 1408: p. 125-39
[PMID:26965120] - Gangl R,Tenhaken R
Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark.
Front Plant Sci, 2016. 7: p. 1115
[PMID:27507985] - Paik I,Kathare PK,Kim JI,Huq E
Expanding Roles of PIFs in Signal Integration from Multiple Processes.
Mol Plant, 2017. 10(8): p. 1035-1046
[PMID:28711729]
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