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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10006196m | ||||||||
Common Name | EUTSA_v10006196mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28420.9 Da PI: 9.211 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.6 | 5.1e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+ Thhalv10006196m 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 113.3 | 2.3e-37 | 95 | 188 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ea+++++qqe++kL+++i+ +q+++Rh++Ge+L+sL++keL++Le +Lek+++++RskK+ell+++ie++qk+e elq++n +Lr+k++e Thhalv10006196m 95 PSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKSELLVAEIEYMQKREMELQHDNLYLRAKIAE 188 45899**************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-39 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.375 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.07E-44 | 17 | 90 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-32 | 17 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.3E-27 | 100 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.993 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEEGGSSHDA DSSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA NTQYYQQEAS KLRRQIRDIQ 120 NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKSEL LVAEIEYMQK REMELQHDNL 180 YLRAKIAEGA RLNQEQQESS VIQGTAVYES GVSSHDQTQH YNNRNYIPVN LLEPNQQFSG 240 QDQPPLQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 4e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_B | 4e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_C | 4e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_D | 4e-20 | 16 | 84 | 1 | 69 | MEF2C |
6c9l_A | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00093 | SELEX | Transfer from AT3G58780 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10006196m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATHAGL1A | 0.0 | M55550.1 Arabidopsis thaliana transcription factor (AGL1), complete cds. | |||
GenBank | AY086196 | 0.0 | AY086196.1 Arabidopsis thaliana clone 22339 mRNA, complete sequence. | |||
GenBank | DQ653159 | 0.0 | DQ653159.1 Arabidopsis thaliana clone 0000017184_0000012028 unknown mRNA. | |||
GenBank | JQ973091 | 0.0 | JQ973091.1 Arabidopsis thaliana Shatterproof (SHP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402748.1 | 0.0 | agamous-like MADS-box protein AGL1 isoform X2 | ||||
Refseq | XP_024012819.1 | 0.0 | agamous-like MADS-box protein AGL1 isoform X1 | ||||
Refseq | XP_024012820.1 | 0.0 | agamous-like MADS-box protein AGL1 isoform X2 | ||||
Refseq | XP_024012821.1 | 0.0 | agamous-like MADS-box protein AGL1 isoform X2 | ||||
Swissprot | P29381 | 1e-177 | AGL1_ARATH; Agamous-like MADS-box protein AGL1 | ||||
TrEMBL | V4NDT4 | 0.0 | V4NDT4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402748.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3341 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-180 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10006196m |
Entrez Gene | 18020146 |
Publications ? help Back to Top | |||
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