PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10006121m | ||||||||
Common Name | EUTSA_v10006121mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 305aa MW: 32975.1 Da PI: 9.6393 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.4 | 9.9e-16 | 234 | 276 | 5 | 47 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ Thhalv10006121m 234 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRR 276 79***************************************94 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.5E-14 | 227 | 277 | No hit | No description |
SMART | SM00338 | 1.3E-12 | 230 | 302 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.427 | 232 | 277 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.49E-23 | 234 | 288 | No hit | No description |
Pfam | PF00170 | 1.3E-12 | 234 | 277 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.56E-10 | 234 | 279 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 237 | 252 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence Send to blast |
MDSQRGIVEE PKSQSLNRQG SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEGNQ 60 PSSMTVNGAA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI QQNKNGGNAH ERRDKQPTLG 120 EMTLEDLLLK AGVVTETIPG SNQDGPGGGP GCGPGGVSAG SGAGLGQNIT QVGPWVQYHQ 180 LPSMPQPQAF MPYPVSDMQA MVSQSSLMGG LSDTQTPGRK RVASGEVVEK TVERRQKRMI 240 KNRESAARSR ARKQAYTHEL EIKVSRLEEE NERLRRQKEV EKILPSAPPP DPKRQLRRTS 300 SAPF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00409 | DAP | Transfer from AT3G56850 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10006121m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB017162 | 0.0 | AB017162.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 3 (AREB3), complete cds. | |||
GenBank | AY062448 | 0.0 | AY062448.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850; T8M16_180) mRNA, complete cds. | |||
GenBank | AY081670 | 0.0 | AY081670.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402943.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Swissprot | Q9LES3 | 0.0 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | V4NE97 | 0.0 | V4NE97_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402943.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1884 | 28 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56850.1 | 0.0 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10006121m |
Entrez Gene | 18020042 |
Publications ? help Back to Top | |||
---|---|---|---|
|