PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006040m
Common NameEUTSA_v10006040mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 376aa    MW: 40906.6 Da    PI: 6.0172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006040mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09210257455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Thhalv10006040m 210 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 257
                      8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.93E-9204261No hitNo description
SuperFamilySSF474592.22E-15204275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15206274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6210257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDLTGGVGAR SGGGGPCREA TGLESLHLGD EFRQLVTLPP ENAGGFTALL ELPPTQAVEL  60
LHFTDSSSSQ AAVTGIGVDI APPLHSFGTL AFPSNSVLME RAARFSVIAT EQQNGNVSGE  120
TTTSSVPSNS SANLDRVKTE PAETDSSQRL VSDQAVENQS PCPSQNNRSG KRKEFEKKVK  180
SSTKKNKSSE ETEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCDKIQ  240
GTALVLDEII NHVQSLQRQV EMLSMRLAAV NPRIDFNLDT ILASENGSLM DGSFNGTAMQ  300
LAWPHQAIEA EHSYHHRQLQ PPPPQQWPFD GLNQPAWGRE EDQDHGNDHN NLMAVSENLM  360
VGPAHLHPNQ VKMEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006040m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527280.0AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402839.10.0transcription factor bHLH60
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLE4MW310.0E4MW31_EUTHA; mRNA, clone: RTFL01-02-C12
TrEMBLV4LP760.0V4LP76_EUTSA; Uncharacterized protein
STRINGXP_006402839.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.20.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]