PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005835m
Common NameEUTSA_v10005835mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 640aa    MW: 71185.9 Da    PI: 10.0099
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005835mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-134393248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     + W t+E++ l +avk++G  +W+++a+++g    ++ ++ +c++++q+++
  Thhalv10005835m 43 QVWGTWEELVLTCAVKRHGDTDWDSVAKEVGsrssLNASAPNCRLKYQDLK 93
                     68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.57E-63895IPR009057Homeodomain-like
SMARTSM007172.4E-64195IPR001005SANT/Myb domain
PfamPF002494.3E-114393IPR001005SANT/Myb domain
PROSITE profilePS500906.1444593IPR017877Myb-like domain
CDDcd001677.99E-64593No hitNo description
SMARTSM002975.8E-20299408IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.2E-17301428IPR001487Bromodomain
SuperFamilySSF473702.88E-17305408IPR001487Bromodomain
CDDcd043692.32E-14306403No hitNo description
PfamPF004399.3E-10312393IPR001487Bromodomain
PROSITE profilePS5001413.051318389IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MMKEEEEAVT SNGMNDDDDI YSRGDSGNNR IGDDNCNLNQ ISQVWGTWEE LVLTCAVKRH  60
GDTDWDSVAK EVGSRSSLNA SAPNCRLKYQ DLKRRFQDPV DGGGDDDGEK NSEAAAEDDR  120
DGEIPWLEQL RSLRVAELRR EVQRCDDSIL SLQLKVKKLE EEKDGNDGDD KPDLEDDAMA  180
VRSRSNETEP ARLNRDTTES ENRSMNESNS TASVDKIADH ERLGGDRKVN ANENSRNPDP  240
DPAFKAAEME EGTVSRRSEM SHSGELGESG TSTVHGKRRK GHKYRTGEDT STRGGSGGDI  300
KSAGNKSQPL IEIIKLIRSH PRGSVFESRL RSQETKDYKR LIRQHLDIKT IEKKMEKGSY  360
VSSGLSFYRD LILLFTNAIV FFSPSSSESM AAQELRTLVS NKMKKATGKS GHRVIKEKSE  420
SSDSRQKSSA APPLVVCKKK SSASKKTSPS SSLKQKDEKK SQEVSEVEKT VTTAVAARSS  480
RRMSKGIGVA AKDTKMGRAK NNNKKQTDSK TDSSNYDDDD DKEETPKTEK KTVDKKKSVV  540
EFLKRIKKNS PQKGKETTSK GEKKSDGKVK KENSKAKPRE LRSNSTGKKK VEIENNSNKS  600
SLKRKQSKKE AEEVTAAATG KRGRESGKEY QQPKKRSRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005835m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012776.10.0uncharacterized protein LOC18020113
TrEMBLV4NDJ90.0V4NDJ9_EUTSA; Uncharacterized protein
STRINGXP_006402623.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein