PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005824m
Common NameEUTSA_v10005824mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 662aa    MW: 73340.6 Da    PI: 9.4031
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005824mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81.1e-121464246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46
                     + W+t+E++ll++av+++G+++W+++a++++       + t+ +c++r++ 
  Thhalv10005824m 14 QTWSTWEELLLACAVHRYGTDSWDSVAAEIQkhnsafRTFTAFDCRHRYNH 64
                     79***********************************999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-71167IPR009057Homeodomain-like
SMARTSM007176.6E-91268IPR001005SANT/Myb domain
PfamPF002497.0E-131363IPR001005SANT/Myb domain
SuperFamilySSF466895.53E-71468IPR009057Homeodomain-like
CDDcd001676.79E-71566No hitNo description
PROSITE profilePS500906.3881666IPR017877Myb-like domain
SMARTSM002974.4E-11101400IPR001487Bromodomain
SuperFamilySSF473701.18E-15287396IPR001487Bromodomain
CDDcd043694.73E-14294395No hitNo description
Gene3DG3DSA:1.20.920.105.5E-15294421IPR001487Bromodomain
PROSITE profilePS5001412.885316381IPR001487Bromodomain
PfamPF004391.7E-9320385IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAKPENDENC RETQTWSTWE ELLLACAVHR YGTDSWDSVA AEIQKHNSAF RTFTAFDCRH  60
RYNHIKRRFS SADGETVAEI SSVPWLEELR KLRVDELRRE VERYDLSISS LQLKVKRLED  120
EREKSLKESE KETENSDLGK IAETKEIHRE SSNGSGVPVT EPPSSPCLKD NSLGTGSENT  180
NRDWKIVEPV DEEPNRFGGD EKPAREDSGK GSCESVAKES AGNSGRADSG REGNDSPEFV  240
ESMNESKGEE EAKETSDVQS SVSLPRKETV EQYQPDNEDQ SLTVNRIPIE SRPLIDIIEI  300
LQTHPIGSLF SRGSLFSRRL ESQLQETPGY EMIIRQHIDF EMIRTRVEEG YYESSRSKFF  360
RDLLLLINNA RVFCGEQSSE YNSAKELNQL IKKQMTTLKI PKQTSPPKEE SLVTSKEEVT  420
VSSPQLSLRP KMSVPITACR KRSSLAVKSS ASVAEPFKKK TKVVPSMNES PASEADEEVE  480
TSDKDQEPIV SKKMARGRTS STAKKVGNRN VKTSLNAGLP SKGRSSNDSS EPKKTDQEKK  540
GNNTNGGSKK QSAASFLKRM KGVSSSETVI ETMKADSSNG KKGAEQRRGN SKNDKGDAGS  600
QKRATGKKPT VEKGSPAKKN SSAASKRSAA PSSPMVAKRG IETSKKEAGS SARPKKRSRR  660
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005824m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402819.10.0uncharacterized protein LOC18019798 isoform X1
TrEMBLV4LP560.0V4LP56_EUTSA; Uncharacterized protein
STRINGXP_006402819.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein