PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005482m
Common NameEUTSA_v10005482mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 617aa    MW: 66733.2 Da    PI: 5.6746
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005482mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.95.5e-1362516111374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      lv++L++cAea++s++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        l pp+++ +++ s++l++   f+e++P+lkf
  Thhalv10005482m 251 LVHALMACAEAIQSNNLTLAEALVKQIGLLAVSQAGAMRKVATYFAEALARRIYR--------LsPPQNQIDHSLSDTLQM--HFYETCPYLKF 334
                      689****************************************************........414444444445555444..4********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      +h+taNqaIlea+eg++rvH+iDf+++qGlQWpaL+qaLa R++gpp +R+Tg+g+p++++++ l+e+g +La++Ae+++v+fe++ +va++l+
  Thhalv10005482m 335 AHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLA 428
                      ********************************************************************************************** PP

             GRAS 188 dleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      dl+ ++L+++p   E++aVn+v++lh+ll +++ +e+    vL +vk+++P +++vveqe++hn++ F++rf+e+l+yys+lfdsle      s
  Thhalv10005482m 429 DLDASMLELRPseIESVAVNSVFELHKLLGRPGGIEK----VLGVVKQIKPVIFTVVEQESNHNGPVFVDRFTESLHYYSTLFDSLEGV---PS 515
                      **********98889******************9999....*********************************************998...69 PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                      ++++++++++lg++i+n+vaceg +r+erhe l++W +r++++GF p++l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++Sa
  Thhalv10005482m 516 SQDKVMSEVYLGKQICNLVACEGPDRVERHEMLSQWANRFGSSGFAPAHLGSNAFKQASMLLALFNgGEGYRVEENNGCLMLGWHTRPLITTSA 609
                      999******************************************************************************************* PP

             GRAS 373 Wr 374
                      W+
  Thhalv10005482m 610 WK 611
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.7E-4056129No hitNo description
PfamPF120414.9E-3556122IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.523225590IPR005202Transcription factor GRAS
PfamPF035141.9E-133251611IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MKRDLHQYQG RNTRLSSHGT AIAGSSSSSS SLPAAACANK DKMMMVKEEE DGGNMDELLA  60
VLGYKVRSSE MAEVALKLEQ LETMMGNVQE DGLSHLATDT VHYNPSELYS WLDNMLSELN  120
PSAVPASGSN GLNPILPSPE IDNSFFTGAG DSSAIGGFSA SDYDLKAIPG NAIYRRSNQF  180
AIDSSSSSNN NQNNKRLKSC SSPDSMVTST STAAQIGGVI GTTATTTTTS TATESTRAVI  240
LVDSQENGVR LVHALMACAE AIQSNNLTLA EALVKQIGLL AVSQAGAMRK VATYFAEALA  300
RRIYRLSPPQ NQIDHSLSDT LQMHFYETCP YLKFAHFTAN QAILEAFEGK KRVHVIDFSM  360
NQGLQWPALM QALALREGGP PVFRLTGIGP PAADNSDHLH EVGCKLAQLA EAIHVEFEYR  420
GFVANSLADL DASMLELRPS EIESVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV  480
VEQESNHNGP VFVDRFTESL HYYSTLFDSL EGVPSSQDKV MSEVYLGKQI CNLVACEGPD  540
RVERHEMLSQ WANRFGSSGF APAHLGSNAF KQASMLLALF NGGEGYRVEE NNGCLMLGWH  600
TRPLITTSAW KLSTAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6224661014378Protein SCARECROW
5b3h_A4e-6224661013377Protein SCARECROW
5b3h_D4e-6224661013377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005482m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525640.0AK352564.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395878.10.0DELLA protein RGA2
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLE4MVL70.0E4MVL7_EUTHA; mRNA, clone: RTFL01-02-P11
TrEMBLV4KPE30.0V4KPE3_EUTSA; Uncharacterized protein
STRINGXP_006395878.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein