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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10005413m |
| Common Name | EUTSA_v10005413mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 232aa MW: 26525.7 Da PI: 8.0635 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10005413m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 54.4 | 1.6e-17 | 9 | 48 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
kri+nks rqvtfskRrng++ KA LS+LC+ +av+++
Thhalv10005413m 9 KRIDNKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVV 48
79*********************************98753 PP
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| 2 | K-box | 26.2 | 3.3e-10 | 151 | 199 | 36 | 84 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84
+l ++++ s+ L ++e+qLe++++ R++K+el++e +++lq+k
Thhalv10005413m 151 SNLEEPNVDNVSVDSLISVEDQLETAMSVTRARKTELMMEFVKTLQEKL 199
555556778999**********************************996 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MGRRKVEIKR IDNKSSRQVT FSKRRNGLIE KARQLSILCE SSIAVLVVFG LRQALQLLLR 60
RQIWFIYPIL RCTSGRFVDR LIGVNGDFDQ DSLVEIWMPH CPLQLLFQNV FMTKIIDRYD 120
IQHADDLKTL ELAEKTRNYL PHKELLELVQ SNLEEPNVDN VSVDSLISVE DQLETAMSVT 180
RARKTELMME FVKTLQEKLG KNTALVTDDE RALSPASNSG NNPPETLSLL K*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the negative regulation of flowering time, probably through the photoperiodic and vernalization pathways; more efficient in cv. Landsberg erecta than in cv. Columbia background. Prevents premature flowering (PubMed:12724541, PubMed:25339407). Involved in the modulation of vernalization impact on flowering according to genotype acclimation to altitude (PubMed:25339407). {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:25339407}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed during vernalization (PubMed:12724541). Regulated by HAM1 and HAM2 via epigenetic modification of chromatins at H4K5 acetylation during flowering (PubMed:23273925). {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:23273925}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK352777 | 1e-144 | AK352777.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-K22. |
| Publications
? help Back to Top |
- Conte MG,Gaillard S,Droc G,Perin C
Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.
BMC Genomics, 2008. 9: p. 183
[PMID:18426584] - Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
Plant Physiol., 2014. 166(4): p. 1928-42
[PMID:25339407] - Nasim Z,Fahim M,Ahn JH
Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
Front Plant Sci, 2017. 8: p. 191
[PMID:28261246]
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