PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005383m
Common NameEUTSA_v10005383mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 283aa    MW: 31552.5 Da    PI: 6.8584
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005383mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-081256344
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                     +W+ ++d  + +a + +  +    +W++Ia+ ++ g+t +q+++++
  Thhalv10005383m 12 SWSRDDDIAFERALATYTDEtdknRWDKIAAVVP-GKTVEQIVEHY 56
                     7*****************99**************.**********9 PP
2Myb_DNA-binding37.65.1e-12117161347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT  E+ +++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Thhalv10005383m 117 AWTSNEHRQFLLGLEKYGKGDWRSISRDFVVTRTPTQVGSHAQKY 161
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.117864IPR017884SANT domain
SMARTSM007171.0E-8962IPR001005SANT/Myb domain
SuperFamilySSF466893.44E-101266IPR009057Homeodomain-like
PfamPF002495.0E-71256IPR001005SANT/Myb domain
CDDcd001678.10E-101256No hitNo description
Gene3DG3DSA:1.10.10.602.5E-41260IPR009057Homeodomain-like
PROSITE profilePS5129414.631109166IPR017930Myb domain
SuperFamilySSF466891.64E-14111166IPR009057Homeodomain-like
SMARTSM007171.1E-7114164IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.5E-15114164IPR006447Myb domain, plants
CDDcd001675.98E-8117162No hitNo description
PfamPF002491.5E-9117161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9117160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTVGEKISGG SSWSRDDDIA FERALATYTD ETDKNRWDKI AAVVPGKTVE QIVEHYDILL  60
DDVKMIESGC VPLPDYDFSE ETNDKETSNL ECGNNRKCEY KQEEEPKLMQ NRRKGIAWTS  120
NEHRQFLLGL EKYGKGDWRS ISRDFVVTRT PTQVGSHAQK YFARLNSKNK HKQRPSIYDV  180
SVTYGTPTIW NTPPSTSQPS LGLPVYGTVP TMWNTQAASQ PLVHIPPTYG TPTIGPSMVG  240
VRPVVLPFGM VGPHMAYGVH HHPVPPNSTV STVHSEPMNI NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-151092892RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005383m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394627.10.0transcription factor SRM1
SwissprotQ9FNN61e-84SRM1_ARATH; Transcription factor SRM1
TrEMBLV4KX020.0V4KX02_EUTSA; Uncharacterized protein
STRINGXP_006394627.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.12e-88Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]