PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10005323m

Common Name

EUTSA_v10005323mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 287aa MW: 31747.8 Da PI: 8.4195

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10005323m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	11	32	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ sF++ L H+r+H Thhalv10005323m 11 TCQVCKISFPNGRALGGHMRSH 32 6********************9 PP
2	zf-C2H2	12.5	0.00043	256	278	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC +C+++F + L H ++H Thhalv10005323m 256 YKCDICDRVFESGQALGGHKKVH 278 9***********99999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.559	10	37	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.47	10	32	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	12	32	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.7E-6	12	33	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.08E-7	205	278	No hit	No description
PROSITE profile	PS50157	10.637	207	234	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.4E-11	207	230	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	207	229	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	209	229	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.5E-11	255	278	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.367	256	278	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	256	278	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	258	278	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MMYSLLKETK TCQVCKISFP NGRALGGHMR SHTQKLSASN AESATGSTIP SQQTSNKLGA 60 KFRRPLETVL MRSVHTSTEV GACPKPDLKT EEGGQRQITG KRKVVVDLED SSESDSCLTD 120 EEGALCLVAM SEGKRPENCQ KPKAIDRRLV STQKGKEKYE HVANLLTSNV GTIAEDHDDD 180 DDDDGGDVDD GDETYKVETE KKCKKKYKCD TCGKVLRSYQ ALGGHRTSHR NKRLKLCEKN 240 DQAVKPENGL VVRRHYKCDI CDRVFESGQA LGGHKKVHYL FLKPSN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10005323m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394501.2	0.0	zinc finger protein ZAT1
TrEMBL	V4KPA2	0.0	V4KPA2_EUTSA; Uncharacterized protein
STRING	XP_006394501.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14171	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61470.1	4e-31	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Thhalv10005323m
Entrez Gene	18011549