PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005259m
Common NameEUTSA_v10005259mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 328aa    MW: 36072.9 Da    PI: 10.1044
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005259mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.4e-16108153247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ +++ + k+lG+g+Wk Ia+t+ ++Rt+ q+ s+ qky
  Thhalv10005259m 108 KPWTEEEHRIFLVGLKKLGKGDWKGIAKTFVTTRTPTQVASHAQKY 153
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6141225IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.853102158IPR017930Myb domain
SuperFamilySSF466899.66E-18104158IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-17105156IPR006447Myb domain, plants
SMARTSM007177.0E-11106156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-11106152IPR009057Homeodomain-like
PfamPF002493.7E-12108153IPR001005SANT/Myb domain
CDDcd001672.10E-10109154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVKETVTSAK TCSHCGHNGH NARTCLNGVN KGTVKLFGVN ISSDPIRSPE VTALRKSLSL  60
GNLESLLAND NSNGNGDPIA AVEDTGYHSD GQIHSKKGIS AHDKKKGKPW TEEEHRIFLV  120
GLKKLGKGDW KGIAKTFVTT RTPTQVASHA QKYFLRLNAN DKRKRRASLF DISLEDQKEK  180
EKNSQVMKTD ASTSSSKTPF KQPVTGRSQE PVQVQTQTEI SKRFQNLSMD QYMPVYQTVP  240
PYYNIPPFMF HPMYYANPEP IRFVHPSGIP VPRHLPIGTP QPDQSNKASQ MAKKDSLELD  300
IGLPSPPSPP QSTGATDLTA HGVIHVK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005259m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122399e-93AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBankCP0026889e-93CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394486.10.0probable transcription factor At5g61620
SwissprotQ9FKF90.0M5162_ARATH; Probable transcription factor At5g61620
TrEMBLV4KP910.0V4KP91_EUTSA; Uncharacterized protein
STRINGXP_006394486.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-179MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]