PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GATA

Protein Properties

Length: 140aa MW: 15314.6 Da PI: 10.5461

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10005103m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.9	6.8e-19	36	69	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+ Thhalv10005103m 36 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 69 ********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	6.18E-13	29	78	No hit	No description
PROSITE profile	PS50114	12.611	30	66	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.4E-14	30	81	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.2E-15	34	69	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.03E-13	35	81	No hit	No description
Pfam	PF00320	5.2E-17	36	70	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	36	61	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MLNHSEKVLV DSEAMERRAG DMIEQNKTSS NDKKTCADCG TSKTPLWRGG PAGPKSLCNA 60 CGIRNRKKRR GVDDKKPKKS NSGGGDLRRN PKFGESLKQR MIDLGMAKKS TVEKQRRKLG 120 EEEQAAVLLM ALSYGSVYA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00554	DAP	Transfer from AT5G49300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10005103m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232578	2e-42	AC232578.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS013H10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395075.1	1e-98	GATA transcription factor 16
Swissprot	Q9FJ10	3e-72	GAT16_ARATH; GATA transcription factor 16
TrEMBL	V4MLN4	3e-97	V4MLN4_EUTSA; Uncharacterized protein
STRING	XP_006395075.1	6e-98	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5050	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49300.1	1e-74	GATA transcription factor 16

Link Out ? help Back to Top
Phytozome	Thhalv10005103m
Entrez Gene	18011551

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795] Ranftl QL,Bastakis E,Klermund C,Schwechheimer C LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2295-311 [PMID:26829982]