PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005088m
Common NameEUTSA_v10005088mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 145aa    MW: 16234.1 Da    PI: 8.2149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005088mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-085878626
                     -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                     C++f  + +C++Gd+C+++H+
  Thhalv10005088m 58 CNRFVTSNFCPFGDSCRYMHP 78
                     ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0016338IPR003604Zinc finger, U1-type
SuperFamilySSF576676.71E-12446No hitNo description
PfamPF062202.1E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.2915280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-65579IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-65777IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-65778IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSKP HLRAKALWYS SSSDLNPQVS NFVPKGVCNR  60
FVTSNFCPFG DSCRYMHPSN IPGDTGLTNN TQTHAGLPNQ HIEGAFLNRD FVNGRQGTGW  120
FDLPPSLKPP PEQGYPQLPS IDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005088m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0007325e-43AJ000732.1 Arabidopsis thaliana ASKalpha gene.
GenBankCP0026885e-43CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF2P165e-43AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394904.11e-106zinc finger CCCH domain-containing protein 3
TrEMBLV4K3W51e-105V4K3W5_EUTSA; Uncharacterized protein
STRINGXP_006394904.11e-105(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-87C3H family protein