 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10004853m |
| Common Name | EUTSA_v10004826mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 235aa MW: 26262.1 Da PI: 9.0248 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10004853m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 90 | 1.3e-28 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+ienk++rqvtfskRr+g+ KKA+E+SvLCda+va+i+fs++gkl+eys
Thhalv10004853m 10 QIENKIRRQVTFSKRRTGLVKKAQEISVLCDADVALIVFSPKGKLFEYS 58
69**********************************************8 PP
|
| 2 | K-box | 75.3 | 1.6e-25 | 89 | 164 | 15 | 90 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90
++++e +kL + i+ +qr++Rhl+Ge+++sLs++eL+ Le qL++slk+ Rs+Kn+l++e+i +lqkk ++ ++
Thhalv10004853m 89 GECSTECSKLLRMIDVMQRSLRHLKGEEVDSLSIRELHALEMQLDTSLKRTRSRKNQLMVESIAQLQKKIDQREDS 164
57899****************************************************************8776554 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.7E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 30.067 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 8.5E-31 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.89E-38 | 2 | 79 | No hit | No description |
| PRINTS | PR00404 | 1.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.6E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.3E-21 | 87 | 163 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 12.985 | 88 | 182 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MGRGRVQLRQ IENKIRRQVT FSKRRTGLVK KAQEISVLCD ADVALIVFSP KGKLFEYSAG 60
SSMERILDRY ERCSYAGQDI PTPSLDSQGE CSTECSKLLR MIDVMQRSLR HLKGEEVDSL 120
SIRELHALEM QLDTSLKRTR SRKNQLMVES IAQLQKKIDQ REDSEPQNLS QGLASLAIPP 180
CEPPHPLPRP TSPPPPLSLG GTSHRNEVGD LDAGTLIRPT NTTLPHWMPR LTGE*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY141238 | 0.0 | AY141238.1 Arabidopsis thaliana MADS-box protein AGL79 mRNA, complete cds. |
