PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004839m
Common NameEUTSA_v10004839mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 242aa    MW: 25804.1 Da    PI: 7.3264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004839mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-0593115123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ CgksFs+   L  H  +H
  Thhalv10004839m  93 YKCTVCGKSFSSYQALGGHKTSH 115
                      9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-1092115No hitNo description
SMARTSM003550.002893115IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-593115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-1393117IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.15793120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-10155182No hitNo description
PfamPF139129.7E-11159184IPR007087Zinc finger, C2H2
SMARTSM003550.82160182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349160182IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MALETLNSPT SATATASPLI RYREEMEPEN LEQWAKRKRT KRQRFDQNHH NQETTPSEEE  60
YLALCLLMLA RGSTVQSTPS TPSRPPLSDH RGYKCTVCGK SFSSYQALGG HKTSHRKPAN  120
SVPSNQEPSN NSHSNSNGGS VVINGDGNTT NAVSHSGKTH TCSICFKSFS SGQALGGHKR  180
CHYDGGNNGN GNGSSSNSVE VVAGSDVSDV DDERSSEQSA IGGHRGFDLN LPADQVSVLI  240
S*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004839m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393949.11e-180zinc finger protein AZF1
SwissprotQ9SSW11e-115AZF1_ARATH; Zinc finger protein AZF1
TrEMBLV4K0761e-178V4K076_EUTSA; Uncharacterized protein
STRINGXP_006393949.11e-179(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-93zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]