PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004752m
Common NameEUTSA_v10004752mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 279aa    MW: 31654.3 Da    PI: 7.2034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004752mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.3e-10301111197
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++++ ++p +f+++  g    +  +++  ++g+sW++ l  ++ +++ ++ ++ W+eFv++n L   D++  +++++++    v+++
  Thhalv10004752m  30 KSKSMRIIPEEFVTSTPGA--FEHRVVFSVRWGNSWQLWL--KRDKKGlFMEEEDWNEFVDDNFLGPHDVLFVTHEDTMNL--EVRIY 111
                      4556689******999655..3446***************..66666669999*********************7665555..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1313112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1314112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-1017112No hitNo description
SMARTSM010196.5E-1219114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.41920114IPR003340B3 DNA binding domain
PfamPF023626.5E-830111IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-10176265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-9177269IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0018183277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MPFKSFMDTL LENTSKPSFC KSLTLGESWK SKSMRIIPEE FVTSTPGAFE HRVVFSVRWG  60
NSWQLWLKRD KKGLFMEEED WNEFVDDNFL GPHDVLFVTH EDTMNLEVRI YKNYIHLMKE  120
IISPPVEADP EAELLNPIPQ NSHQETPAST SASASASASG ARQGCVPVIN PEQYLVNPKS  180
PYFVKTLTKK IDVLYVKQPV IDKYGLKFGP HKSTMYYLIG KEKHEALTKI YCNGRNFCFS  240
GWAAICRKYK LGEGDTVVCE LERSGGVVTA VRVHFVNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004752m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394800.10.0B3 domain-containing protein At5g25470
RefseqXP_024007651.10.0B3 domain-containing protein At5g25470
SwissprotQ680D91e-109Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLV4ML080.0V4ML08_EUTSA; Uncharacterized protein
STRINGXP_006394800.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-105B3 family protein