PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

MYB_related

Protein Properties

Length: 297aa MW: 32584.1 Da PI: 10.5215

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10004691m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.2	8e-13	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI + k R+ ++k++w++ Thhalv10004691m 5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDPEfslvlKSRSNVDLKDKWRN 55 79***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.362	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-16	2	61	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	1.20E-17	6	56	No hit	No description
SuperFamily	SSF46785	2.56E-15	119	192	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	1.3E-13	120	185	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.1E-12	120	186	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	20.416	122	190	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	1.1E-9	125	183	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0000786	Cellular Component	nucleosome
GO:0005730	Cellular Component	nucleolus
GO:0003691	Molecular Function	double-stranded telomeric DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043047	Molecular Function	single-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGAPKQKWTP EEEAALKAGV LKHGTGKWRT ILSDPEFSLV LKSRSNVDLK DKWRNISVTA 60 LWGSRKKAKL ALKRTQPAPK QDDNNTATLS ILPLANDEER ANPTSPGGSG GGSPRTCASK 120 RSITSLDKII LEAITNLKEP RGSDRTSIFL YIEENFKTPP NMKRHVAVRL KHLSSNGPLV 180 KIKHKYRFST NFNSLGARQK SHQLFVEGNN KKDAPKPEEN GNKSRAEGEL FMIKGMTAAE 240 AAEAAARAVA EAEFAITEAE EASKEAERAE AEAEAAQIFA KAAMKALKFK IRNHTW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00597	DAP	Transfer from AT5G67580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10004691m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY039883	0.0	AY039883.1 Arabidopsis thaliana AT5g67580/K9I9_15 mRNA, complete cds.
GenBank	AY077668	0.0	AY077668.1 Arabidopsis thaliana AT5g67580/K9I9_15 mRNA, complete cds.
GenBank	AY519545	0.0	AY519545.1 Arabidopsis thaliana MYB transcription factor (At5g67580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393965.1	0.0	telomere repeat-binding factor 2
Swissprot	Q9FJW5	1e-147	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	V4MIR2	0.0	V4MIR2_EUTSA; Uncharacterized protein
STRING	XP_006393965.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3809	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	1e-135	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Thhalv10004691m
Entrez Gene	18012953

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]