PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004645m
Common NameEUTSA_v10004645mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 311aa    MW: 34744.6 Da    PI: 4.8293
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004645mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1970123356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Thhalv10004645m  70 KKRRLSAEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 123
                      56689************************************************9 PP
2HD-ZIP_I/II130.56.6e-4269161193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls+eqvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk+++++L++++++L +e+ke
  Thhalv10004645m  69 EKKRRLSAEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSLQRDNDSLFAEIKE 161
                      69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-2060127IPR009057Homeodomain-like
PROSITE profilePS5007117.97765125IPR001356Homeobox domain
SMARTSM003899.1E-1968129IPR001356Homeobox domain
CDDcd000864.14E-1870126No hitNo description
PfamPF000461.3E-1670123IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-2171132IPR009057Homeodomain-like
PRINTSPR000317.7E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000317.7E-6105121IPR000047Helix-turn-helix motif
PfamPF021836.4E-17125166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKRSRGSSDS LSGFLPICHS ATDKQISPRP TTTGFLYSGA GDYSPMFDGL EDDGSLEDIG  60
VRHASAAAEK KRRLSAEQVK ALEKNFEIDN KLEPERKVKL AQELGLQPRQ VAIWFQNRRA  120
RWKTKQLERD YGVLKSNFDA LKRSRDSLQR DNDSLFAEIK ELRAKVNVEG PGGSNGNTSI  180
EEDGIAKRVE AMVNQSNKEV LQLSHRPPPP NIPTEVPTSE LTYEMFNIFP RTESFREDPA  240
DSSDSSAVLN EEYSPTRAEA AAATAVEMST MGCFSQFVKM EEHEDLFSGE EACKLFADNE  300
QWYCSGQWNS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00587DAPTransfer from AT5G65310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004645m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532470.0AK353247.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-D07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394048.10.0homeobox-leucine zipper protein ATHB-5
SwissprotP466671e-171ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLV4KJE30.0V4KJE3_EUTSA; Uncharacterized protein
STRINGXP_006394048.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129861526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.11e-163homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]