PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004643m
Common NameEUTSA_v10004643mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ZF-HD
Protein Properties Length: 312aa    MW: 34934.3 Da    PI: 8.4968
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004643mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.99.1e-3280134459
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      ++YkeClkNhAas+Gg+a+DGCgEfmps geeg+++a++C+AC CHRnFHRre e 
  Thhalv10004643m  80 IKYKECLKNHAASMGGNAIDGCGEFMPS-GEEGSIEAFTCSACKCHRNFHRREIEG 134
                      79*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2480135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2880132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-3081132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.64782131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.64E-20210281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-30216282IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-26220276IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEVATQEDHD MPIPINTTYG NSCGGHGHII HHLHHQPANS TPSNPLISPS NGNGLGKTHD  60
HHVGYNIMIN NNKKEKPVVI KYKECLKNHA ASMGGNAIDG CGEFMPSGEE GSIEAFTCSA  120
CKCHRNFHRR EIEGEEKNFF SPYHHNQQPQ LQRKLMFHNN HKMIKSPLPQ QMIMPIGVAT  180
AAGSNSESED FMEEDGGGSL TFRQQPPPPP PYCYGGQNQK KRFRTKFTQE QKEKMLSFAE  240
SVGWKMQRQE ESVVQQFCQE IGVRRRVLKV WMHNNKHNLS KKCNNVNNNV ELSAGNKDIN  300
KAITGNLASS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-232202781775ZF-HD homeobox family protein
1wh7_A6e-232212781875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004643m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395776.10.0zinc-finger homeodomain protein 3
SwissprotO647221e-151ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLV4KST60.0V4KST6_EUTSA; Uncharacterized protein
STRINGXP_006395776.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-149homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]