PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004632m
Common NameEUTSA_v10004632mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 315aa    MW: 34700.4 Da    PI: 8.6575
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004632mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.8e-393594261
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks
  Thhalv10004632m 35 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 94
                     57899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-342193IPR003851Zinc finger, Dof-type
PfamPF027013.9E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5533993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSSHTTNLPS PKPDHRISGT SQTKKPPSSS VASQDQQTLK CPRCNSSNTK FCYYNNYSLS  60
QPRHFCKSCR RYWTRGGALR NVPIGGGCRK TKKSIKPNAI TPSSSSSQRF FSSIMEDSSK  120
FFPPPTTMDF QLAGLSLNKI NDLQLLNNQE VLGLRPVEQV ETTPVDVGSG LSLMGFGEYN  180
SSNHSPATFA TAGANDGNLA TSIETLSCLN QDLHWRLQQQ RMAMLFGNSK EDTVVVERPQ  240
PILYRNLEIV NSSPSPTKKG ENQTEWYFGN NNANEGVINS NDSNNNNNNN SGGSDHWNNG  300
IQAWTDLNHY NALP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004632m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266390.0AB026639.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13.
GenBankAB4938150.0AB493815.1 Arabidopsis thaliana At5g65590 mRNA for hypothetical protein, partial cds, clone: RAAt5g65590.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394012.10.0dof zinc finger protein DOF5.7
SwissprotQ9LSL61e-179DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLV4KVA20.0V4KVA2_EUTSA; Uncharacterized protein
STRINGXP_006394012.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-171Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]