PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004566m
Common NameEUTSA_v10004566mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 333aa    MW: 36301.3 Da    PI: 6.5827
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004566mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.7e-18244278135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg  kTp+WR gp g ktLCnaCG++y++ +l
  Thhalv10004566m 244 CSHCGIQKTPQWRAGPMGAKTLCNACGVRYKSGRL 278
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.0E-10025332IPR016679Transcription factor, GATA, plant
SMARTSM004013.5E-16238292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.517238274IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-14241301No hitNo description
Gene3DG3DSA:3.30.50.104.3E-15242276IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.72E-14243291No hitNo description
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
PfamPF003201.0E-15244278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MERVEAALKS SIRKEMALKT TTPVYDECMA MTTVQTGFPA DDFSVDDLLD LSNDDVFADD  60
DVEPKAQQEE MLRVSSSEEP HDHGDASHRD FGSLPLSELS VPADELANLE WLSHFVDDSF  120
MEYSAPNLTG TSTKPAWLTG DRKHPVTPAT EESCFNSPVP AKARSKRNRN GGKVWSLGSS  180
SSSGPSSSSS TSSSSSSGPS SPWFSGAELP EPFATSEKPP VPKKHKKRSA ESVYSGQPLQ  240
QRRCSHCGIQ KTPQWRAGPM GAKTLCNACG VRYKSGRLLP EYRPACSPTF SSELHSNHHR  300
KVMEMRRKKE PTDDNATGLN QLVHSPQAVP SF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004566m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2265100.0DQ226510.1 Thellungiella halophila clone ThBAC2 hypothetical protein genes, complete cds; transposon En/Spm, complete sequence; transposon Gypsy, complete sequence; and transposon AC-like element, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393827.10.0GATA transcription factor 5
SwissprotQ9FH571e-166GATA5_ARATH; GATA transcription factor 5
TrEMBLQ0ZR570.0Q0ZR57_EUTHA; GATA transcription factor
TrEMBLV4KUR40.0V4KUR4_EUTSA; GATA transcription factor
STRINGXP_006393827.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-159GATA transcription factor 5