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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10004509m |
| Common Name | EUTSA_v10004509mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
SRS |
| Protein Properties |
Length: 346aa MW: 36752.4 Da PI: 7.9167 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10004509m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 230.1 | 4e-71 | 131 | 277 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96
sg+ +CqdCGnqakkdCah+RCRtCCksrg++C thvkstWvpaakrrerqqqla+ ++ + + +kr+re+ +++++l +t+++s++
Thhalv10004509m 131 SGGPNCQDCGNQAKKDCAHMRCRTCCKSRGLECPTHVKSTWVPAAKRRERQQQLASGQQPQ----GLSVPKRQREHIPARSTSLVCTRIPSHN- 219
6889***************************************************997776....56899*********************97. PP
DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ l + ++P+evss+avfrcvrvssvddge+e+aY+tavsi+GhvfkGiLydqG++e
Thhalv10004509m 220 PYGLGVGNFPPEVSSPAVFRCVRVSSVDDGEDEYAYKTAVSISGHVFKGILYDQGPAE 277
6699***************************************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MAAFFSLGNG GGDGGGSSQD EHHHHHHSSN TSNYNPSPSG TESWLWCRNP NSNANANANA 60
NANAGGGDIA PSYKGTLELW QQHPSNQEML FQQQQRLDLY TSAAGLGVGP TNRTLFETSG 120
DALMMMRSGG SGGPNCQDCG NQAKKDCAHM RCRTCCKSRG LECPTHVKST WVPAAKRRER 180
QQQLASGQQP QGLSVPKRQR EHIPARSTSL VCTRIPSHNP YGLGVGNFPP EVSSPAVFRC 240
VRVSSVDDGE DEYAYKTAVS ISGHVFKGIL YDQGPAERSS SVGGSQPLNL ITAGPSASSS 300
SPNVSCNNGV VGSTSDHYID PASLNYPTPI NSFMTGTHFF SNPRA*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ226510 | 0.0 | DQ226510.1 Thellungiella halophila clone ThBAC2 hypothetical protein genes, complete cds; transposon En/Spm, complete sequence; transposon Gypsy, complete sequence; and transposon AC-like element, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G66350.1 | 1e-143 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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