PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004475m
Common NameEUTSA_v10004475mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 360aa    MW: 40607.2 Da    PI: 6.2007
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004475mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.8e-32206261156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W++eLH+rF++a++qLGG+++AtPk+i+elmk++gLt+++vkSHLQkYRl+
  Thhalv10004475m 206 KQRRCWSQELHRRFLNALKQLGGPHVATPKQIRELMKIDGLTNDEVKSHLQKYRLH 261
                      79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.493203263IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-28204264IPR009057Homeodomain-like
SuperFamilySSF466898.61E-18204264IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-27206261IPR006447Myb domain, plants
PfamPF002492.8E-7208259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MIKNLSNMKN YNQKRERCSE YIEALEEERR KINVFQRELP LCLELVTQAI EAYKKEISGT  60
TTENLYGQSE CSEQTTGECG PVLDLFIPIK HSSTSTEEEE EEVDEDDDDE HEFHEDIDFN  120
DKNMKSEWLK SVQLWNQPDA VLSNKLERLE KETETIVEVI KGKDGGVSQQ PPCYETSNGK  180
YGEGSDGEKK DQPQKDDGGG GRGQRKQRRC WSQELHRRFL NALKQLGGPH VATPKQIREL  240
MKIDGLTNDE VKSHLQKYRL HTRRPSQTTP NNRNSQTQHF VVVGGLWVPQ AAANHSTANA  300
VVSAETTTGI YGPMVSPLPC HSNFDRTISD KKSNKGMVRC TSPAMSSSTR ANTKYAKIS*
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004475m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395625.10.0transcription factor HHO1
SwissprotQ9LS001e-164HHO1_ARATH; Transcription factor HHO1
TrEMBLV4MMY50.0V4MMY5_EUTSA; Uncharacterized protein
STRINGXP_006395625.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-161G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]