PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

G2-like

Protein Properties

Length: 360aa MW: 40607.2 Da PI: 6.2007

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10004475m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.8e-32	206	261	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG+++AtPk+i+elmk++gLt+++vkSHLQkYRl+ Thhalv10004475m 206 KQRRCWSQELHRRFLNALKQLGGPHVATPKQIRELMKIDGLTNDEVKSHLQKYRLH 261 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.493	203	263	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.4E-28	204	264	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.61E-18	204	264	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-27	206	261	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	208	259	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MIKNLSNMKN YNQKRERCSE YIEALEEERR KINVFQRELP LCLELVTQAI EAYKKEISGT 60 TTENLYGQSE CSEQTTGECG PVLDLFIPIK HSSTSTEEEE EEVDEDDDDE HEFHEDIDFN 120 DKNMKSEWLK SVQLWNQPDA VLSNKLERLE KETETIVEVI KGKDGGVSQQ PPCYETSNGK 180 YGEGSDGEKK DQPQKDDGGG GRGQRKQRRC WSQELHRRFL NALKQLGGPH VATPKQIREL 240 MKIDGLTNDE VKSHLQKYRL HTRRPSQTTP NNRNSQTQHF VVVGGLWVPQ AAANHSTANA 300 VVSAETTTGI YGPMVSPLPC HSNFDRTISD KKSNKGMVRC TSPAMSSSTR ANTKYAKIS*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MIKNLSNMKN YNQKRERCSE YIEALEEERR KINVFQRELP LCLELVTQAI EAYKKEISGT  60
TTENLYGQSE CSEQTTGECG PVLDLFIPIK HSSTSTEEEE EEVDEDDDDE HEFHEDIDFN  120
DKNMKSEWLK SVQLWNQPDA VLSNKLERLE KETETIVEVI KGKDGGVSQQ PPCYETSNGK  180
YGEGSDGEKK DQPQKDDGGG GRGQRKQRRC WSQELHRRFL NALKQLGGPH VATPKQIREL  240
MKIDGLTNDE VKSHLQKYRL HTRRPSQTTP NNRNSQTQHF VVVGGLWVPQ AAANHSTANA  300
VVSAETTTGI YGPMVSPLPC HSNFDRTISD KKSNKGMVRC TSPAMSSSTR ANTKYAKIS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10004475m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395625.1	0.0	transcription factor HHO1
Swissprot	Q9LS00	1e-164	HHO1_ARATH; Transcription factor HHO1
TrEMBL	V4MMY5	0.0	V4MMY5_EUTSA; Uncharacterized protein
STRING	XP_006395625.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	1e-161	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10004475m
Entrez Gene	18012241

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]