PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004458m
Common NameEUTSA_v10004458mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 364aa    MW: 40156.8 Da    PI: 8.011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004458mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.6e-16170215555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hne ErrRRdriN+++ +L++llP+a      K +K++iL  ++e++k+Lq
  Thhalv10004458m 170 HNESERRRRDRINQRMRTLQKLLPTA-----SKADKVSILDDVIEHLKQLQ 215
                      *************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-18162234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.06165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17168232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-13170215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-9170219No hitNo description
SMARTSM003531.9E-16171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSNYGVKELT WENGQLTVHG LGEEVEPTTS ANPIWTQNPN GCETLESVVH QAAMQPSKLQ  60
LQSQNGPGHN SKSKDGSCSR KRGYPQDMDC WFAVQEESHK VGHSVTASAS GTNMSWASFE  120
SGRSLKTART GDRDYLLSGS ETQDTEGDEQ ETRGEAGRSN GRRGRAAAIH NESERRRRDR  180
INQRMRTLQK LLPTASKADK VSILDDVIEH LKQLQAQVQF MSLRANLPQQ MMMQQLPPPQ  240
SVLSIQHQQQ QQQQQQQQQQ QQFQMSLLAT MARMGMGGGG NAYGGLVPPP PPPPLMVPPM  300
ANRDCTSGSS PALTDPYSLY LAQTMNMDLY NKMAAAIYRQ QSDQTTKVNA GMPSSSSNHE  360
KRD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting negatively in the phytochrome B signaling pathway under prolonged red light. Regulates PHYB abundance at the post-transcriptional level, possibly via the ubiquitin-proteasome pathway. May regulate the expression of a subset of genes by binding to the G-box motif. {ECO:0000269|PubMed:15486100, ECO:0000269|PubMed:18252845}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004458m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By red light. Stable upon light exposure.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527340.0AK352734.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394522.10.0transcription factor PIF7
SwissprotQ570R70.0PIF7_ARATH; Transcription factor PIF7
TrEMBLE4MW370.0E4MW37_EUTHA; mRNA, clone: RTFL01-03-L18
TrEMBLV4KWR30.0V4KWR3_EUTSA; Uncharacterized protein
STRINGXP_006394522.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141231822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.11e-155phytochrome-interacting factor7
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. de Wit M,Ljung K,Fankhauser C
    Contrasting growth responses in lamina and petiole during neighbor detection depend on differential auxin responsiveness rather than different auxin levels.
    New Phytol., 2015. 208(1): p. 198-209
    [PMID:25963518]
  4. Bou-Torrent J, et al.
    Regulation of Carotenoid Biosynthesis by Shade Relies on Specific Subsets of Antagonistic Transcription Factors and Cofactors.
    Plant Physiol., 2015. 169(3): p. 1584-94
    [PMID:26082398]
  5. Mizuno T,Oka H,Yoshimura F,Ishida K,Yamashino T
    Insight into the mechanism of end-of-day far-red light (EODFR)-induced shade avoidance responses in Arabidopsis thaliana.
    Biosci. Biotechnol. Biochem., 2015. 79(12): p. 1987-94
    [PMID:26193333]
  6. Paik I,Kathare PK,Kim JI,Huq E
    Expanding Roles of PIFs in Signal Integration from Multiple Processes.
    Mol Plant, 2017. 10(8): p. 1035-1046
    [PMID:28711729]
  7. Peng M, et al.
    Linking PHYTOCHROME-INTERACTING FACTOR to Histone Modification in Plant Shade Avoidance.
    Plant Physiol., 2018. 176(2): p. 1341-1351
    [PMID:29187567]
  8. Huang X, et al.
    Shade-induced nuclear localization of PIF7 is regulated by phosphorylation and 14-3-3 proteins in Arabidopsis.
    Elife, 2019.
    [PMID:29926790]