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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10004204m |
| Common Name | EUTSA_v10004204mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
C3H |
| Protein Properties |
Length: 452aa MW: 50678.6 Da PI: 5.682 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10004204m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 43.8 | 4.1e-14 | 118 | 140 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
e C+f++rtG CkyG++CkF+H+
Thhalv10004204m 118 EDCSFYMRTGSCKYGSSCKFNHP 140
89********************9 PP
|
| 2 | zf-CCCH | 30.1 | 8.3e-10 | 166 | 186 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25
+C++++rtG CkyG++C+F+H
Thhalv10004204m 166 ECKYYFRTGGCKYGESCRFSH 186
6******************** PP
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| 3 | zf-CCCH | 37.5 | 4e-12 | 209 | 233 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C+f++r+G Ck+G+ CkF+H+
Thhalv10004204m 209 GEKECPFYMRNGSCKFGGDCKFNHP 233
7899********************9 PP
|
| 4 | zf-CCCH | 18.3 | 4.1e-06 | 352 | 377 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++ +tG Ck+ +Ck++H++
Thhalv10004204m 352 DQPECSYYVKTGDCKFKYKCKYHHPK 377
689*********************96 PP
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| 5 | zf-CCCH | 32.1 | 2e-10 | 400 | 422 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
C +++r+G+Ck+G+ C+F H+
Thhalv10004204m 400 NMCTHYSRYGICKFGPACRFDHS 422
67********************8 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 1.57E-6 | 113 | 142 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4E-6 | 114 | 141 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.159 | 114 | 142 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-11 | 118 | 140 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.7E-6 | 120 | 139 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.4E-5 | 161 | 188 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.056 | 161 | 189 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-6 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-7 | 166 | 186 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.6E-6 | 167 | 189 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.8E-6 | 207 | 234 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.601 | 207 | 235 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.5E-6 | 209 | 234 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.7E-10 | 209 | 233 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.577 | 350 | 378 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.076 | 350 | 377 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.42E-5 | 354 | 380 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0078 | 396 | 423 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.971 | 396 | 424 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.11E-6 | 397 | 424 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 401 | 422 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.3E-7 | 402 | 422 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MSKPEEIPDP NPATTDPNPP SRSSSDNDPV ADRDPSDLNH VSEELSDHLR NVGLEEATKD 60
LSVPISASEG NRETDSWALG SEKKNKEEEE EEEEEAEARD GSEREKRMIA YPVRPDAEDC 120
SFYMRTGSCK YGSSCKFNHP VRRKFPIGRE KVREREEDVE NPRLMECKYY FRTGGCKYGE 180
SCRFSHTKEQ TSLTSRPELN FLGLPIRPGE KECPFYMRNG SCKFGGDCKF NHPDPTAIGG 240
VDSPLFRGNN GGSVGSFSPK DASQASSTSW SSSKHMNGTG TAPFIPVMYS QNRGVSPQNS 300
EWNGYQAHSV YSSERSGLPP STYQVNNSLA ETSSFSQYQQ QMPVEEFPER PDQPECSYYV 360
KTGDCKFKYK CKYHHPKNRL PKQAPSSFND KGLPLRPDQN MCTHYSRYGI CKFGPACRFD 420
HSIPPTFSSS ISQTVEAPQV GDNRNDNDSW N*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK228790 | 0.0 | AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16. |
