PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004177m | ||||||||
Common Name | EUTSA_v10004105mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 459aa MW: 51266 Da PI: 5.2665 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.9 | 1.2e-50 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp+GfrF+Ptdeelv++yL+ k++g++ ++ +vi+evdi+k+ePwdLp + vk++++ew fF++ d+ky++g+r nrat +gyWkatgkd++v Thhalv10004177m 9 LPVGFRFSPTDEELVKYYLRLKINGHDDDV-RVIREVDICKWEPWDLPdfSVVKTTDSEWLFFCPLDRKYPSGSRMNRATVAGYWKATGKDRKV 101 79*************************999.99***************6447888999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++ +g+k+tLvfy+grapkg++t W+mheyr+ Thhalv10004177m 102 KSGNTKIIGVKRTLVFYTGRAPKGSRTCWIMHEYRA 137 **99******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-57 | 4 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.849 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-25 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002230 | Biological Process | positive regulation of defense response to virus by host | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MEVLSLASLP VGFRFSPTDE ELVKYYLRLK INGHDDDVRV IREVDICKWE PWDLPDFSVV 60 KTTDSEWLFF CPLDRKYPSG SRMNRATVAG YWKATGKDRK VKSGNTKIIG VKRTLVFYTG 120 RAPKGSRTCW IMHEYRATEK DLDGTKSGQN PFVICKLFKK QDVVNGAAPE DLKSSEVEPA 180 VSSPAVVDEM KSEVELSEVS LVFPKTDDDD AKPSDNGESS LVVSGECHSE NSAPEVTTTE 240 QLDHIDWQSY LELESLDCNL YSPLHSQVQS ELGFQSGSND LFSNQSVAHI QTQYGTNDAD 300 EMMFELLESA LEIPYEFPET KHLALPTLEQ STYEPQNPVN ICNMINDVSG TGIKIRARRT 360 QAPGCAEQFV MQGDASRRLR LQVNHNSQKP ETVKKEVMDT ARETITKGCG NFMRWNSRSG 420 FIFKKIAAMG CSYKGLFSAG VVAVVFAMSV CCLTAKFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-46 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-46 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-46 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-46 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-46 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 9e-46 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004177m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394715.1 | 0.0 | NAC domain-containing protein 91 isoform X1 | ||||
Swissprot | Q9LKG8 | 0.0 | NAC91_ARATH; NAC domain-containing protein 91 | ||||
TrEMBL | V4MKT4 | 0.0 | V4MKT4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394714.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 0.0 | TCV-interacting protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004177m |
Entrez Gene | 18013055 |
Publications ? help Back to Top | |||
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