PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10004151m

Common Name

EUTSA_v10004151mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 468aa MW: 51456.6 Da PI: 5.707

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10004151m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg +F++ ++ +H ++ Thhalv10004151m 127 FECPICGNHFKSEEEVSVHVESC 149 89*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF143503	6.02E-18	183	251	IPR018997	PUB domain
CDD	cd09212	2.36E-20	186	269	No hit	No description
Pfam	PF09409	8.1E-18	186	259	IPR018997	PUB domain
SMART	SM00580	2.4E-22	187	254	IPR018997	PUB domain
SuperFamily	SSF54236	2.84E-12	333	442	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	7.3E-8	358	441	No hit	No description
PROSITE profile	PS50033	10.446	358	442	IPR001012	UBX domain
Pfam	PF00789	1.4E-4	359	437	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSGPV NPIQNRFNPP QAPNPNPTPR 60 PTKPSPSPPP PIGSSLAPLP EKPISSGSTT NPDPNPVRPP PQDGFDPYGA LITSSNRSQN 120 GYSLNVFECP ICGNHFKSEE EVSVHVESCL GNTNGDESAS EKIGNDDDKS EMEKLVVLYL 180 SGKPTESSID VLLRLLKNIV KEPENGKFRR VRMSNAKIKE AIGDVAGGVE LLELVGFELK 240 EENEEIWAVM EVPGEEQTQL IKKVVGILEN RKIEISGSSP QVSVAEEPVA PKKIDREIRV 300 FFSVSENVAS RIEVPDSFYS LTADEIKREA DLRRKKIAES QLLIPRSFRE KQAKAARKRY 360 KRSLIRVQFP DGVVLQGVFA PWEPTIALYE FVSSALKEPS LQFELLDPVL VKRRVIPHTP 420 APGQKSRTLE DEELVPSALI KFRPIETDSL VYTGLCNELL EISEPLS*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSGPV NPIQNRFNPP QAPNPNPTPR  60
PTKPSPSPPP PIGSSLAPLP EKPISSGSTT NPDPNPVRPP PQDGFDPYGA LITSSNRSQN  120
GYSLNVFECP ICGNHFKSEE EVSVHVESCL GNTNGDESAS EKIGNDDDKS EMEKLVVLYL  180
SGKPTESSID VLLRLLKNIV KEPENGKFRR VRMSNAKIKE AIGDVAGGVE LLELVGFELK  240
EENEEIWAVM EVPGEEQTQL IKKVVGILEN RKIEISGSSP QVSVAEEPVA PKKIDREIRV  300
FFSVSENVAS RIEVPDSFYS LTADEIKREA DLRRKKIAES QLLIPRSFRE KQAKAARKRY  360
KRSLIRVQFP DGVVLQGVFA PWEPTIALYE FVSSALKEPS LQFELLDPVL VKRRVIPHTP  420
APGQKSRTLE DEELVPSALI KFRPIETDSL VYTGLCNELL EISEPLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	3e-14	313	442	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10004151m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395865.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	V4MNI9	0.0	V4MNI9_EUTSA; Uncharacterized protein
STRING	XP_006395865.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Link Out ? help Back to Top
Phytozome	Thhalv10004151m
Entrez Gene	18012280

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]