PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004051m
Common NameEUTSA_v10004053mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 503aa    MW: 56491.4 Da    PI: 6.5732
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004051mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.18.6e-1391325022374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +  L++cA+a+s++dl +a++++++l+ ++s +g+p+qRl ay++e+L a+la+s+s++ykal+  ++++  s + l+++++++ev+P++kf++
  Thhalv10004051m 132 RADLVSCARAMSENDLMMAHSMMEKLRLMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNKCPAPP--SNDLLSYMHILYEVCPYFKFGY 223
                      678************************************************************8777775..8999****************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + aN aI ea+++e+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rLak+A++++vpfefn  v+ +++
  Thhalv10004051m 224 MSANGAIAEAMKEENRVHIVDFQIGQGSQWITLIQAFAARPGGPPRIRITGIDDMTSAyaRGGGLSIVGNRLAKLAKQFNVPFEFNS-VSVSVS 316
                      ******************************************************999999999************************.7999** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++++++L v+ gEalaVn+++ lh+++desvs+e++rd++L++vksl Pkvv++veqe+++n++ Fl rf+e+++yy+a+f+s++++lpr++++
  Thhalv10004051m 317 EVKPKDLGVRAGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLCPKVVTLVEQESNTNTAAFLPRFMETMNYYAAMFESIDVTLPRNHKQ 410
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ri+vE+++l+r++vn++acega+r+erhe l+kWr+r+e+aGF+p+pls  ++ ++k+ll++++++ yr+ee++g+l+lgW++r Lv+ +aW+
  Thhalv10004051m 411 RINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFEMAGFTPYPLSPLVNLTIKSLLANYSDK-YRLEERDGALFLGWMQRDLVASCAWK 502
                      ****************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.938105483IPR005202Transcription factor GRAS
PfamPF035143.0E-136132502IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MYKHPRQEIE AYYLPPFEPN SVEKLMYLPF QNSPKRYRTR EPSPDSPAYN ALSSATVFVQ  60
HNNNSAYDDT SGSCVTDDLN DEFKHKIKEL ETVMMGPDSL DLFVDGTDSF DSTSCHNSWR  120
STLEALSRRD LRADLVSCAR AMSENDLMMA HSMMEKLRLM VSVSGEPIQR LGAYLLEGLV  180
AQLASSGSSI YKALNKCPAP PSNDLLSYMH ILYEVCPYFK FGYMSANGAI AEAMKEENRV  240
HIVDFQIGQG SQWITLIQAF AARPGGPPRI RITGIDDMTS AYARGGGLSI VGNRLAKLAK  300
QFNVPFEFNS VSVSVSEVKP KDLGVRAGEA LAVNFAFVLH HMPDESVSTE NHRDRLLRMV  360
KSLCPKVVTL VEQESNTNTA AFLPRFMETM NYYAAMFESI DVTLPRNHKQ RINVEQHCLA  420
RDVVNIIACE GADRVERHEL LGKWRSRFEM AGFTPYPLSP LVNLTIKSLL ANYSDKYRLE  480
ERDGALFLGW MQRDLVASCA WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-641355028375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004051m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525330.0AK352533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395212.10.0scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_006395213.10.0scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_024006979.10.0scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_024006980.10.0scarecrow-like transcription factor PAT1 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLV4KYK60.0V4KYK6_EUTSA; Uncharacterized protein
STRINGXP_006395212.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]