PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004031m
Common NameEUTSA_v10004031mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 512aa    MW: 56283.6 Da    PI: 6.4504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004031mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08326373455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Thhalv10004031m 326 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 373
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.92E-9320377No hitNo description
SuperFamilySSF474592.88E-16320386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-16322388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5326373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MENELFMNTE LPPPPEMAVH FEPPSSSSPT LNWALMDPNL SRNSSPPQDC FPWEKSTEQQ  60
QQQSFFDSAL SSLVSSPTPS NSNFSGGGGD GFMIRELIGK LGNIGNSSGE IYGAPMGNNN  120
GQESRSASCY ATPMSSPPPP MMSRTTPLTE FSGDPGFAER AARFSCFGSR SFNGRTNSGL  180
PINNGNIVSS GKLTRVSSTP ALKALVSPEF ASAVSRPMIP AGESNPKLPG EFSRKRKSAS  240
KGKPKENPLS TASPSPTFSK TAERKQDWNG KGIKISEEKG GKRRREEEEE DKDEEEEGNK  300
SNSTKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKIGE RMKLLQDLVP GCNKVTGKAL  360
MLDEIINYVQ SLQRQVEFLS MKLSSVNDTR LEFNMDTLVS KDVMIPSSSN RLHEEGIQCE  420
SSNHHQQLNN YNNNSQLHPN ISSSNMMLQS SMNSLETSTL ARSFTHLPTL TQFTDSISQY  480
HMFSEEDLQS IVGMGVAHNP NHESQNMKIE L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004031m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0029450.0BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056370.0BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395164.10.0transcription factor bHLH78
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLV4K4H80.0V4K4H8_EUTSA; Uncharacterized protein
STRINGXP_006395164.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]