PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004022m
Common NameEUTSA_v10004022mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 513aa    MW: 55476.5 Da    PI: 9.2348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004022mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-0584106123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  C+k F r  nL+ H r H
  Thhalv10004022m  84 FVCDVCNKGFQREQNLQLHRRGH 106
                      89*******************88 PP
2zf-C2H212.70.00038160182123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  Thhalv10004022m 160 WKCDKCSKRYAVQSDWKAHSKTC 182
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.46E-883106No hitNo description
PROSITE profilePS5015711.03284106IPR007087Zinc finger, C2H2
SMARTSM003550.004784106IPR015880Zinc finger, C2H2-like
PfamPF139128.7E-584106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355110125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-5148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.46E-8155180No hitNo description
SMARTSM00355140160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSSSSSYNTS VVPSSSSSAQ PFFITGSGAG DNDFDRKDTF MSMIQQPISS APPAKKRRNQ  60
PGNPNPDAEV VALSPKTLMA TNRFVCDVCN KGFQREQNLQ LHRRGHNLPW KLKQKSTKEV  120
KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH YYRKHGEKKW KCDKCSKRYA VQSDWKAHSK  180
TCGTKEYRCD CGTIFSRRDS YITHRAFCDA LIQETARNPT VSFTSMTAAS SGSGSGGLYG  240
RLGGSSALSH HHPNSGFTPL TGYNLNIASP ENSRDFVPQS SNPNFLIQCS SSQGMLTAPH  300
NNDQSFINQH GLIQFDPVDN INLKSSNTNN SFFNLGFFQE NTKNSETSLP SLYSTDVLVR  360
HREENMNAGS NVSATALLQK ATQMGSMTSN DPSALFRGLA SSSNSSSVVV NDFGGGHIMG  420
NDNNGNLQGL MNSLAAVNGG GVGGSGGNIF DVHFGDNGNM SGSDKLTLDF LGVGGMLRNV  480
NRGGSVRGRG RDDVSLDGEV KFPEQNHPFG RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33156222369Zinc finger protein JACKDAW
5b3h_F3e-33156222369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004022m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3864030.0FJ386403.1 Thellungiella halophila putative inositol phosphatase gene, partial cds; cyclin-like protein, putative microtubule-associated protein, putative C2H2 zinc finger protein, brassinosteroid receptor-like protein, putative transmembrane transporter, salt overly sensitive 1-like protein, valyl-tRNA synthetase-like protein, putative glutamate decarboxylase, putative peptide transporter, putative F-box protein, putative nitrate transporter, putative NADH dehydrogenase, putative Myb DNA binding proteins, putative C2H2 zinc finger proteins, putative F-box protein, SWI/SNF helicase-like protein, defensin-like proteins, and putative PPR repeat protein genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395812.10.0protein indeterminate-domain 4, chloroplastic isoform X1
SwissprotQ8GYC10.0IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLV4L0630.0V4L063_EUTSA; Uncharacterized protein
STRINGXP_006395812.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.10.0indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]