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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10003841m | ||||||||
Common Name | EUTSA_v10003841mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | Trihelix | ||||||||
Protein Properties | Length: 613aa MW: 69968.6 Da PI: 7.4048 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.2 | 2.8e-15 | 94 | 159 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W+ +evlaL+++r+ +e+++ + We+ s+k++e gf+r+p++Ckek+e+ ++ry +++ ++ Thhalv10003841m 94 QWCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRTPQECKEKFEEEERRYFSSNNNTTDH 159 7********************998.....9*******************************9999887776 PP | |||||||
2 | trihelix | 100.5 | 1.3e-31 | 450 | 548 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr..............emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rW+++evlaLi++rr + +++++++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcp Thhalv10003841m 450 RWPRDEVLALINIRRsisnmndddhhrkdGISQSSSSSSKAVPLWEKISKKMLEVGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCP 542 8**************77777755555444344444445699*******************************************8.9******* PP trihelix 81 yfdqle 86 yf+ql+ Thhalv10003841m 543 YFHQLT 548 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-10 | 93 | 156 | No hit | No description |
PROSITE profile | PS50090 | 5.517 | 95 | 146 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-4 | 445 | 522 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.0E-19 | 449 | 549 | No hit | No description |
CDD | cd12203 | 3.75E-23 | 449 | 528 | No hit | No description |
PROSITE profile | PS50090 | 6.771 | 450 | 521 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MFDDGEVPEQ IQRFIASPPP PPPHLLHQPG AERSLPFPIP FASYNTNQAQ LMLSLDSRKI 60 IHHHDHHHDI KDGGATSEWM GHDGDNHHHH HHRQWCSDEV LALLRFRSTV ENWFPEFTWE 120 HTSRKLAEVG FKRTPQECKE KFEEEERRYF SSNNNTTDHH IRNYNNKGNS RIFSESEEFY 180 HHGHDDDYVS SEVGDNQNKR NNSLEGKGNV EDERALDLLE VDRTDHQDQG QVDESSMGKI 240 NSVDNAGKVR NVEDDAKSSS SSSLMMIMRD NKKRKRKKEK GKFGVLKGFC EGLVRNMIAQ 300 QEEMHKKLLE DMVKKEEEKV AREEAWKNQE MERLSKEVEI REKEQAMASD RNANIIKFIS 360 KFRDHDHHDG GNSKIQSSSQ DSSSLALPRT QSSRKSQTSS LSQALTPHNQ LTSLQPIQKA 420 LEPISTKTLK TKTQNPKPPK SDEKSDLGKR WPRDEVLALI NIRRSISNMN DDDHHRKDGI 480 SQSSSSSSKA VPLWEKISKK MLEVGYKRSA KRCKEKWENI NKYFRKTKDV NKKRPLDSRT 540 CPYFHQLTAL YSQPSAGTTA TATATSPGDL ESRPVENRVG TGDPDIPAAM HGDADGAGEK 600 NNVPFSGFDL EF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 271 | 276 | KKRKRK |
2 | 271 | 277 | KKRKRKK |
3 | 273 | 277 | RKRKK |
4 | 273 | 278 | RKRKKE |
5 | 273 | 279 | RKRKKEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10003841m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006395013.1 | 0.0 | trihelix transcription factor GTL2 | ||||
Swissprot | Q8H181 | 0.0 | GTL2_ARATH; Trihelix transcription factor GTL2 | ||||
TrEMBL | V4KM31 | 0.0 | V4KM31_EUTSA; Uncharacterized protein | ||||
STRING | XP_006395013.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8268 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10003841m |
Entrez Gene | 18013137 |
Publications ? help Back to Top | |||
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