PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003748m
Common NameEUTSA_v10003748mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family FAR1
Protein Properties Length: 687aa    MW: 78590.5 Da    PI: 6.1218
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003748mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.89.9e-2572163190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      ++Y+++A+++GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke      +w+v+++++ HnHel 
  Thhalv10003748m  72 EYYSAFARKIGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvegVTQWYVSQFSNVHNHELL 163
                      69********************8888.******************************************998767789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2272163IPR004330FAR1 DNA binding domain
PfamPF105516.5E-22295388IPR018289MULE transposase domain
PROSITE profilePS509669.297554602IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-6568601IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-4577604IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MALKPLNNIW IRRQQCPCGD WKCYIRVEGD ESSFQVTKNE IETTTSSSSS PYDTVFMPYV  60
GQIFRTDDEA FEYYSAFARK IGFSIRKARS TESQNLGVYR RDFVCYRSGF NQPRKKANVE  120
HPRERKSVRC GCDAKLYLTK EIVEGVTQWY VSQFSNVHNH ELLEDDQVRL LPAYRKIQQA  180
DQERILLLSK AGFPVNRIVK LLELEKGVQA GQLPFIEKDV RNFVRACKKT VQENDAFLTE  240
KRETDLLELL ESCKALAERD MGFAYDCTSD ENQKVENLAW AYGDSVQAYS LFGDVVVFDT  300
TYRSITYGLL LGVFFGIDNN GKAVLLGCVL LQDESCRAFT WALQTFVRFM RGRHPQTILT  360
DIDTGLKDAI ARELPNTNHV VFMWHVVSKL ASWFSQSLGS HYDEFRAGFE MLCRAGNVDE  420
FEQQWDLLVT RFGLVPDRHA ALLYSCRATW SPCYIREHFL AHTMTAEFNL SVDSFLKRIV  480
SGPTCIQVLL EEVSAAASLA KQIPPRVPYP SMKTSMPMED HARGVLTPYA FSVLQNEMVL  540
SVQYAVSEMA NGPYIVHHFK KMEGECCVFW NPENEEIHCS CKEFEHSGIL CRHSLRVLAV  600
KNCFHIPEQY FLVRWRQENP LVTEENQDGL GIGDDCAQTF HSLTETLLAE SMITKDRLDY  660
TNQELSALID RVRNIAPANT CISHDC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003748m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007204.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLV4MLI20.0V4MLI2_EUTSA; Uncharacterized protein
STRINGXP_006395020.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]