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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10003393m | ||||||||
Common Name | EUTSA_v10003393mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25825.9 Da PI: 6.6356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 150 | 190 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Thhalv10003393m 150 RKRRERINDRLKILQRLVPNG-----TKVDISTMLEEAVHYVKFLQ 190 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.773 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-13 | 144 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-12 | 146 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-12 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.03E-12 | 149 | 194 | No hit | No description |
Pfam | PF00010 | 1.0E-8 | 150 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MENQDFVDGE LESLLGMFNF DQCSSDGSSF YNDQHHHEID VVSSNDLFSF ATILQGNYPA 60 VLEGSSNQTN LYVDSRQELV KPRKKQKIRP ESNWVTEPKT TWRDGQSLNS FNTSDDEKGL 120 GLDTNTSETL KVKGKPNKGI ATDPQSLYAR KRRERINDRL KILQRLVPNG TKVDISTMLE 180 EAVHYVKFLQ LQIKKSSLNS DDLWMYAPLA HNGLNIGLHH NLLSRLT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 88 | RKKQKIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10003393m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024013157.1 | 1e-165 | transcription factor bHLH139 | ||||
Swissprot | Q3E7L7 | 1e-122 | BH139_ARATH; Transcription factor bHLH139 | ||||
TrEMBL | V4L342 | 1e-168 | V4L342_EUTSA; Uncharacterized protein | ||||
STRING | XP_006403282.1 | 1e-169 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4132 | 22 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43175.1 | 1e-110 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10003393m |
Entrez Gene | 18020592 |
Publications ? help Back to Top | |||
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