PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003290m
Common NameEUTSA_v10003290mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YC
Protein Properties Length: 130aa    MW: 14766.2 Da    PI: 10.6556
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003290mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.91.6e-169881997
            NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                      e+P++r+kki+k d+d+++i +ea  l++ + elf+  l+ +s l + e+kr+t++   +  av+r + + dfl+d  p
  Thhalv10003290m  9 PEFPITRVKKIMKLDKDINKINSEALHLVTYSTELFLRFLAEKSSLVTAEKKRKTVNLDHLRIAVKRHQpTSDFLLDSLP 88
                     589**************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-17898IPR009072Histone-fold
PfamPF008082.3E-201073IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.5E-201188IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAEEETIRPE FPITRVKKIM KLDKDINKIN SEALHLVTYS TELFLRFLAE KSSLVTAEKK  60
RKTVNLDHLR IAVKRHQPTS DFLLDSLPLP SAQPVRVAKT VSEKKPPPVG TRRIDQFFSK  120
GKEKKTDSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003290m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7971401e-128KC797140.1 Brassica napus transcription factor subunit NF-YC13 (NF-YC13) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403274.25e-88nuclear transcription factor Y subunit gamma
TrEMBLV4LQG07e-87V4LQG0_EUTSA; Uncharacterized protein
STRINGXP_006403274.11e-87(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-60nuclear factor Y, subunit C13