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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10002947m | ||||||||
Common Name | EUTSA_v10002947mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 21375.8 Da PI: 8.6684 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp+Cg F+ L H+++H Thhalv10002947m 114 HICPICGIDFPMGQALGGHMKKH 136 68********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-5 | 53 | 78 | No hit | No description |
Pfam | PF13912 | 7.7E-9 | 54 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.411 | 55 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.2 | 55 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 57 | 78 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.39E-5 | 109 | 136 | No hit | No description |
Pfam | PF13912 | 1.2E-8 | 114 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.512 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVARSGNPDR TVQDTPANSE ILDDRTVEVN AANDLLQLSR VGDESGGGNR EKRVFRCKTC 60 MKDFSSSQAL GGHRSASHRK PVKKSRDEKS SSLSSESVVT TNKTKNTSKK TASHICPICG 120 IDFPMGQALG GHMKKHSNER ESGELVTRSF FPETTTSTVT TTLQEPSSGK RVLSTDLGSD 180 SVESMINLNL ELGSGKNE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10002947m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418970.1 | 1e-143 | zinc finger protein ZAT8 | ||||
Swissprot | Q9LX85 | 4e-52 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | V4MY15 | 1e-142 | V4MY15_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418970.1 | 1e-143 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 7e-46 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10002947m |
Entrez Gene | 18014046 |