PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002873m
Common NameEUTSA_v10002873mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 327aa    MW: 36896.1 Da    PI: 5.0503
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002873mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-3099153155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrW+++LH++Fv+av++LGG++kAtPk+++e m+v+g++l+hvkSHLQk+Rl
  Thhalv10002873m  99 KARLRWSSDLHDCFVNAVAKLGGPDKATPKSVREKMEVEGIALHHVKSHLQKFRL 153
                      68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-2696153IPR009057Homeodomain-like
SuperFamilySSF466899.32E-1398153IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-2699154IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSSQELKKKE KGKEIFTLKE NPSTSFHRVD HFDQTEEVSM YFTEQGIAAL LEANKETLRE  60
NLELEQSKKE NGEKVEGIQE KKSSSSKITP CIFYTSDDKA RLRWSSDLHD CFVNAVAKLG  120
GPDKATPKSV REKMEVEGIA LHHVKSHLQK FRLGKCNIRD DSDPYNKRFI NPYVTIEPQS  180
MPGSSITQQE LHLNHDWLIQ DSYPNAAFLH TVVQPNIDSL HQGSSSNSTI PLSITPQPIQ  240
TYNPYCTYNY PPYNTLEAVK AQLSALQNSS TSRARETPSR EINVSSSVSR DEEDPVDMYI  300
DWDKVEEVDI DQLDPVAVLE ALGFGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1799155258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1799155258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1799155258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1799155258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1799155258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1799155258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1799155258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1799155258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002873m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886266.11e-127transcription repressor KAN1
TrEMBLV4LBC50.0V4LBC5_EUTSA; Uncharacterized protein
STRINGXP_006418607.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134061520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.11e-117G2-like family protein