PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002843m
Common NameEUTSA_v10002843mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 312aa    MW: 35428.6 Da    PI: 6.9046
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002843mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix735.1e-2362142286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      Wt++e+l+Lie ++e++ +++rg lk ++Wee++ ++  + g+ rs++qC++k+e+++kr+++++++++       s +p+++q+e
  Thhalv10002843m  62 WTHDETLLLIESYKEKWYAIGRGPLKSNHWEEIAVAVsGRSGVDRSATQCRHKIEKMRKRFRAERQSMGPI-----SIWPFYSQME 142
                      ***********************************998899****************************84.....68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-2062144No hitNo description
PROSITE profilePS500906.66762119IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSTPSPTSSP PSDSNPNSVA TPPHQNQPPS TSTPTPPPPH NTVVALAAST SAVARKTQPV  60
LWTHDETLLL IESYKEKWYA IGRGPLKSNH WEEIAVAVSG RSGVDRSATQ CRHKIEKMRK  120
RFRAERQSMG PISIWPFYSQ MEELDSNPAP ISARPLTRLP PNSSNHHYQE DEEEEEEEEE  180
EDYEEEEEEE DEKQSKSRSI NYILRRPGTV NRLAGVGGGL LQWGQRERSK RKRREDDEGG  240
GGGEKRRKGA RAVAAEIREF AERVMVMEKR KMEFAKETVK MRKEMEMKRL KLIQSSQTQL  300
LQFLNTAFDS F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231247KRREDDEGGGGGEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002843m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418679.10.0trihelix transcription factor ASIL1
TrEMBLV4KH220.0V4KH22_EUTSA; Uncharacterized protein
STRINGXP_006418679.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-111Trihelix family protein