PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002799m
Common NameEUTSA_v10002799mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 191aa    MW: 22215.1 Da    PI: 9.4712
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002799mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.7e-17124158135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +Cgt +TplWR+gp g  tLCnaCG++yr  +l
  Thhalv10002799m 124 CLHCGTRNTPLWREGPKGAGTLCNACGMRYRTGRL 158
                      99*****************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-14118172IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-14121179No hitNo description
Gene3DG3DSA:3.30.50.105.8E-15122156IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.99E-18123172No hitNo description
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.505124154IPR000679Zinc finger, GATA-type
PfamPF003205.9E-15124158IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAHKDVVVHE EEEDFGAAMQ KLEIPYEELE QNSIDDEIRE IMKDSNSLLE DYREFEEDLS  60
HNVSINVTND LKPFRTSSNS PTMTRVRSLA PKRPRNKRGR RKRRFFKSTA YLFDSEVDVT  120
DKICLHCGTR NTPLWREGPK GAGTLCNACG MRYRTGRLLP EYRPASSPGF KPNLHSNFHR  180
RVMEIRRKRN *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00391DAPTransfer from AT3G45170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002799m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419066.11e-141GATA transcription factor 14
RefseqXP_024009703.11e-141GATA transcription factor 14
SwissprotQ9M1U21e-75GAT14_ARATH; GATA transcription factor 14
TrEMBLV4L5F01e-139V4L5F0_EUTSA; Uncharacterized protein
STRINGXP_006419066.11e-140(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163681113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.11e-65GATA transcription factor 14