PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10002625m

Common Name

EUTSA_v10002625mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

G2-like

Protein Properties

Length: 297aa MW: 32232.3 Da PI: 7.2202

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10002625m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.6	6.7e-34	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Thhalv10002625m 40 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-32	37	96	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.541	37	97	IPR017930	Myb domain
SuperFamily	SSF46689	6.09E-17	39	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-7	42	92	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-26	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MYSAIRSLPL DGGHSGDYHG PLDGTNLPGD ACLVLTTDPK PRLRWTSELH ERFVDAVTQL 60 GGPDKATPKT IMRTMGVKGL TLYHLKSHLQ KFRLGRQACK ESTENSKDAS CVGESQDTGS 120 SSSSSLRMAA QEQNEGYQVT EALRAQMEVQ RRLHEQLEVQ RRLQLRIEAQ GKYLQSILEK 180 ACKAFDDQAA AFAGLEAARE ELSELAIKVS NSTQGTTVPF FDATKMMMMP SLSELAVAID 240 HKSNNITTNC SVESSLTSAT NGSSVSAASM KKRHRGDNVG IGYETSWIMP SSSTIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10002625m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050355	0.0	AY050355.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
GenBank	AY088428	0.0	AY088428.1 Arabidopsis thaliana clone 6626 mRNA, complete sequence.
GenBank	AY094046	0.0	AY094046.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418805.1	0.0	protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	0.0	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	V4MXM6	0.0	V4MXM6_EUTSA; Uncharacterized protein
STRING	XP_006418805.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	0.0	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10002625m
Entrez Gene	18013703

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]