PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002586m
Common NameEUTSA_v10002586mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 364aa    MW: 39809.2 Da    PI: 5.2946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002586mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.8e-10198245455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  Thhalv10002586m 198 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 245
                      8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.60E-11192249No hitNo description
SuperFamilySSF474591.02E-16192263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17194263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7198245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNMDKQTEQT LNYLPLGQSD PFGNGNEGTI GDFLGRFCNP QEISPLTLQS FSLNSQISEN  60
FPISGGIRFP PYPGQFGSDR EFGALGLQPT TQESNNSSLL DPDSVSAAQT TKSNSRKRKS  120
IPTGNGKESP ASSSLTASNS KISGENVGSK AGKRSKQDEA GSSKSGIEKC ENKDDAKPPE  180
PLKDYIHVRA RRGQATDSHS LAERARREKI SERMTLLQDL VPGCNRITGK AVMLDEIINY  240
VQSLQRQVEF LSMKLATINP RMEFNANAAL STEMIQQGES LTQSLYAIAC SEQRLPSGYY  300
SLGKNMPRFS DAQFHSSDGF VQPETPGFWE NDLQSIVQMG FGDIQQQSNN NCSEPTLQMK  360
LEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002586m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654410.0AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965360.0AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418851.10.0transcription factor bHLH77
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLV4L4R90.0V4L4R9_EUTSA; Uncharacterized protein
STRINGXP_006418851.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]