PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002541m
Common NameEUTSA_v10002541mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 423aa    MW: 47897.1 Da    PI: 5.6542
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002541mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.91.1e-135624224374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      +L +cA+avs+++l +a++++ +l+ ++s +g+p+qRl ay++e+L arl+ ++s++yk+l+++e +   s e l+++ +++ev+P++kf+++ 
  Thhalv10002541m  62 VLAACAKAVSEDNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLSATGSSIYKSLQSREPD---SYEFLSYVYVLHEVCPYFKFGYMS 152
                      799*************************************************************998...9*********************** PP

             GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                      aN aI ea+++ee++HiiDf+i+qG QW+aL+qa+a+Rp+g+p++RiTg+g+       +l ++++rL k+A++++vpf+fn+ v+++  ++e+
  Thhalv10002541m 153 ANGAIAEAMKEEEKIHIIDFQIGQGSQWVALIQAFAARPGGAPNIRITGIGD-----GSNLVTVRKRLDKLAKKFHVPFKFNA-VSRSSWEVEV 240
                      ****************************************************.....889***********************.68889999** PP

             GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                      e+L+v++gEal +n++++lh+l+desvs+e++rd++L++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s+++ lpr+++eri+v
  Thhalv10002541m 241 ENLDVRKGEALGINFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINV 334
                      ********************************************************************************************** PP

             GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E+++l+r++vn++acegaer+erhe l+kW++r+++aGF+p+pls+ + +++++ll+ ++ +gy++ee++g+l+lgW+dr Lvs +aW+
  Thhalv10002541m 335 EQHCLARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIVSATIRALLKDYS-NGYEIEERDGALYLGWMDRILVSSCAWK 422
                      ***********************************************************9.9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.84533403IPR005202Transcription factor GRAS
PfamPF035143.9E-13362422IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDDVRGFRHN LREVETLMLQ PLPEISESIN DVICHEFSMW PEDADDLLLI VEAISRGDLK  60
WVLAACAKAV SEDNLLMARW CMGELRGMVS ISGEPIQRLG AYMLEGLVAR LSATGSSIYK  120
SLQSREPDSY EFLSYVYVLH EVCPYFKFGY MSANGAIAEA MKEEEKIHII DFQIGQGSQW  180
VALIQAFAAR PGGAPNIRIT GIGDGSNLVT VRKRLDKLAK KFHVPFKFNA VSRSSWEVEV  240
ENLDVRKGEA LGINFAYMLH HLPDESVSME NHRDRLLRMV KSLSPKVVTL VEQECNTNTS  300
PFLPRFLETL SYYTAMFESI DVMLPRNHKE RINVEQHCLA RDVVNIIACE GAERIERHEL  360
LGKWKSRFSM AGFEPYPLSS IVSATIRALL KDYSNGYEIE ERDGALYLGW MDRILVSSCA  420
WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-63634228375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002541m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069550.0AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.
GenBankAC0072110.0AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence.
GenBankAF2107320.0AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
GenBankAK1752100.0AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23.
GenBankBT0264550.0BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418535.10.0scarecrow-like protein 21
SwissprotQ9S7H50.0SCL21_ARATH; Scarecrow-like protein 21
TrEMBLV4MX300.0V4MX30_EUTSA; Uncharacterized protein
STRINGXP_006418535.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.10.0SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]