PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002455m
Common NameEUTSA_v10002455mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 593aa    MW: 67497.5 Da    PI: 6.2208
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002455mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS404.51e-1232175871374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +++lL++cA+av+s d+++a + L++++e++s++gd +qRl  +f+eAL+ar+++    ++ +  + ++s++++++ l+a+k f++++P++ ++
  Thhalv10002455m 217 MRNLLMQCAQAVASFDQRRAAEKLKEIREHSSSHGDGTQRLGYHFAEALEARITG----IMTTPISATSSRTSMVDILKAYKEFVQACPTIIMC 306
                      579****************************************************....444444445555669******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++taN++I+e +++++++HiiDf+i +G+QWp+L+qaL++Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f+++++vpfe+++ +ak++
  Thhalv10002455m 307 YFTANRTIYELASKATTLHIIDFGILYGFQWPCLIQALSQRPGGPPKLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFNVPFEYSF-IAKKW 399
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ++++l+eL +k+gE+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P+++v++e +  +ns+ Fl+rf eal +ys+lfd++e+++++e++
  Thhalv10002455m 400 DTITLDELVIKSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEVNGMYNSPFFLTRFREALFHYSSLFDMFETTISEEND 493
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       r+ vErel+ r++++v+acegaer++r et+++W+ r+ +a F+pv+l++++ k+ k ++ + + + + ++++++++++gWk+r L++vS+W+
  Thhalv10002455m 494 CRTLVERELIIRDAMSVIACEGAERFARPETYKQWQVRILRARFRPVKLNKQMIKEGKEIVGQRYHKDFVIDNDNHWMFQGWKGRVLYAVSCWK 587
                      *************************************************************9999888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.278191567IPR005202Transcription factor GRAS
PfamPF035143.5E-121217587IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDAILQVPND GFRFENGTGS CCKPRNNLDS GTNRFTCFNE SESQNPSSSP TKSKVCSDYH  60
PVFKYINDML MEEDLEGQSC MLEDSLALQT AERSFFEVLQ DQTPLSDHSE GSLGNFSSLT  120
SLHQPTSEFT GSPEISEVST RRYRLRDDGD EEDDIEGGRK AKLPAISMVD ELAEKFEEVL  180
LVCQKNELGE ATPSKTGRAK SSSNRSKPQK SDQPVDMRNL LMQCAQAVAS FDQRRAAEKL  240
KEIREHSSSH GDGTQRLGYH FAEALEARIT GIMTTPISAT SSRTSMVDIL KAYKEFVQAC  300
PTIIMCYFTA NRTIYELASK ATTLHIIDFG ILYGFQWPCL IQALSQRPGG PPKLRVTGIE  360
LPQPGFRPSE RVEETGRRLK RFCDKFNVPF EYSFIAKKWD TITLDELVIK SGETTVVNCI  420
LRLQYTPDET VSLNSPRDTA LKLFRDINPD LFVFAEVNGM YNSPFFLTRF REALFHYSSL  480
FDMFETTISE ENDCRTLVER ELIIRDAMSV IACEGAERFA RPETYKQWQV RILRARFRPV  540
KLNKQMIKEG KEIVGQRYHK DFVIDNDNHW MFQGWKGRVL YAVSCWKPAK KQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5022358825380Protein SCARECROW
5b3h_A5e-5022358824379Protein SCARECROW
5b3h_D5e-5022358824379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002455m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527110.0AK352711.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418880.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLE4MW140.0E4MW14_EUTHA; mRNA, clone: RTFL01-05-F16
TrEMBLV4MXT70.0V4MXT7_EUTSA; Uncharacterized protein
STRINGXP_006418880.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]