PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002300m
Common NameEUTSA_v10002300mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 319aa    MW: 36251 Da    PI: 6.174
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002300mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1492.4e-46141401128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      l pGfrF+P+d el+++yL++k+ g+++++  vi+ev+iyk+ePwdLp ++  ++e+ew++F+ r kky++g+++ rat+ gyWkatgk ++v+
  Thhalv10002300m  14 LFPGFRFSPSDIELISYYLRRKIYGDENSV-AVIAEVEIYKFEPWDLPgESKLKSENEWFYFCARGKKYPHGSQSGRATQVGYWKATGKVRTVK 106
                      579************************999.89***************543334678************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++++vg+k+tLvf+ grap++e+t+W+mhey +
  Thhalv10002300m 107 V-GNQTVGTKRTLVFHIGRAPRSERTEWIMHEYCI 140
                      *.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-528154IPR003441NAC domain
PROSITE profilePS5100550.2414156IPR003441NAC domain
PfamPF023653.0E-2316139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSEEVDKLIV LSALFPGFRF SPSDIELISY YLRRKIYGDE NSVAVIAEVE IYKFEPWDLP  60
GESKLKSENE WFYFCARGKK YPHGSQSGRA TQVGYWKATG KVRTVKVGNQ TVGTKRTLVF  120
HIGRAPRSER TEWIMHEYCI HGAPTDALVV CRLRINTGFQ ASLSQRQVEN GYVQDDEYVG  180
QNGCSEMQNN YEPEFEISYD DIAESSNVVE GQADTDDDCF AEIMNDDIIK LDEEALKASQ  240
LFQPNYPTQQ DIVFSEASSS KKRSKRGSRT LPKPPPRAKR MRNQFLVKKD DSQRLMKNVL  300
ATTSFLGIFL ISVFLLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4031537162NO APICAL MERISTEM PROTEIN
1ut4_B2e-4031537162NO APICAL MERISTEM PROTEIN
1ut7_A2e-4031537162NO APICAL MERISTEM PROTEIN
1ut7_B2e-4031537162NO APICAL MERISTEM PROTEIN
3swm_A2e-40315310165NAC domain-containing protein 19
3swm_B2e-40315310165NAC domain-containing protein 19
3swm_C2e-40315310165NAC domain-containing protein 19
3swm_D2e-40315310165NAC domain-containing protein 19
3swp_A2e-40315310165NAC domain-containing protein 19
3swp_B2e-40315310165NAC domain-containing protein 19
3swp_C2e-40315310165NAC domain-containing protein 19
3swp_D2e-40315310165NAC domain-containing protein 19
3ulx_A2e-4011383138Stress-induced transcription factor NAC1
4dul_A2e-4031537162NAC domain-containing protein 19
4dul_B2e-4031537162NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002300m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651729.11e-162NAC domain-containing protein 40-like isoform X1
SwissprotQ9XIN71e-153NAC40_ARATH; NAC domain-containing protein 40
TrEMBLV4M1Z80.0V4M1Z8_EUTSA; Uncharacterized protein
STRINGXP_006408701.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104532533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-154NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]