PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002040m
Common NameEUTSA_v10002040mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 329aa    MW: 37146.5 Da    PI: 5.2873
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002040mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.61.6e-42141371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      l pGfrF+Ptd el+++yL++k+ g+++++  vi+ev+iyk+ePwdLp ++  ++e+ew++F+ r k   +g++++r+t+ gyWk+tg+ ++v+
  Thhalv10002040m  14 LFPGFRFSPTDVELISYYLRRKIGGDDNSV-AVIAEVEIYKFEPWDLPgESKLKSENEWFYFCARGK---NGSQSRRVTQLGYWKSTGQVRSVK 103
                      579************************999.89***************543334678*******988...6899******************** PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      s +++ vg+k++Lvf++gra++ e+t+W+mhey +
  Thhalv10002040m 104 S-GNQIVGTKRMLVFHTGRAHRNERTEWFMHEYCI 137
                      9.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-4811152IPR003441NAC domain
PROSITE profilePS5100547.3614153IPR003441NAC domain
PfamPF023655.1E-2316136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSEDAEKLIF ISALFPGFRF SPTDVELISY YLRRKIGGDD NSVAVIAEVE IYKFEPWDLP  60
GESKLKSENE WFYFCARGKN GSQSRRVTQL GYWKSTGQVR SVKSGNQIVG TKRMLVFHTG  120
RAHRNERTEW FMHEYCIHGA TQDALVVCRL KKNTDFRASS SQTPMDNGHV QDDEYVGQTG  180
GSEMQNNSYS VYEPELHIPN GDIVESSNVV EDQADTDDDC YAEIMNDDII NLDEEVLKAS  240
LAFRPNYQQT ISSEASSSRK RLECGSNKKP KQTMDVAETA SFGWRIPNPF RIKKNDNQRS  300
MTGYLATTAL LAILISVFFT ILTTRGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-351316219173NAC domain-containing protein 19
3swm_B3e-351316219173NAC domain-containing protein 19
3swm_C3e-351316219173NAC domain-containing protein 19
3swm_D3e-351316219173NAC domain-containing protein 19
3swp_A3e-351316219173NAC domain-containing protein 19
3swp_B3e-351316219173NAC domain-containing protein 19
3swp_C3e-351316219173NAC domain-containing protein 19
3swp_D3e-351316219173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002040m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408702.10.0NAC domain-containing protein 40
SwissprotQ9XIN71e-162NAC40_ARATH; NAC domain-containing protein 40
TrEMBLV4LI100.0V4LI10_EUTSA; Uncharacterized protein
STRINGXP_006408702.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104532533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-157NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]