PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002005m
Common NameEUTSA_v10002005mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 397aa    MW: 44367.4 Da    PI: 4.9996
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002005mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.9e-34234288155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt+eLHe+Fveav+qLGGs+kAtPk +l++mkv+gLt++hvkSHLQkYR+
  Thhalv10002005m 234 KARMRWTQELHEAFVEAVNQLGGSNKATPKGVLKHMKVEGLTIYHVKSHLQKYRT 288
                      68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.796231291IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-31232289IPR009057Homeodomain-like
SuperFamilySSF466894.84E-18233289IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-25234288IPR006447Myb domain, plants
PfamPF002491.5E-10236287IPR001005SANT/Myb domain
PfamPF143793.8E-21319363IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MQDLVGRAPL WHLQEPMKST FTDISKENNG DSLSDLARTS SGPSLQNPSV AADMSFHSEH  60
NQLMEGPYHL LSENGGAVGH IYSNDLHNTP MVSHEKQNGS SDVPFISKIL DWDPASIPDL  120
FDCPFDSSTQ SNQMEDGGIV ASDDIHRRIF LPELDDELIT DENPLMSTHW NDLLLETSST  180
PASKVQKPTM QSQIQQPQVV LQQPSPCVEL QPLVRTVSSN NNNNNDSNNN AAAKARMRWT  240
QELHEAFVEA VNQLGGSNKA TPKGVLKHMK VEGLTIYHVK SHLQKYRTYR PEPSEAGSSE  300
TKLTPIEHIT SLDTKRGIDI TEALRIQMEV QKQLHEQLEI QRNMQLRIEE QGKALMMMFE  360
KQNMGFGKPE QGDDETSPEN GSEESDSPPS KRPRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-28233290158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-28233290158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-28233290158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-28233290158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-28233290158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-28233290158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-28233290158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-28233290158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00111ampDAPTransfer from AT2G20400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002005m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408958.10.0myb family transcription factor PHL4 isoform X1
SwissprotQ8GXC21e-127PHL4_ARATH; Myb family transcription factor PHL4
TrEMBLV4NUG80.0V4NUG8_EUTSA; Uncharacterized protein
STRINGXP_006408958.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20400.11e-113G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]