PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001803m
Common NameEUTSA_v10001803mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 337aa    MW: 38726.6 Da    PI: 7.3262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001803mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13162212154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N  ++ Lr+l+P++   + ++ + a+i+  A++++k L
  Thhalv10001803m 162 QRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YIQRGDQASIVGGAIDFVKIL 212
                      79****************************...9***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.94E-10160217No hitNo description
PROSITE profilePS5088814.672161212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-15161225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-13162223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-10167218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
SLDQKVNVRR SIEVEGSAEY KKKFLEDEQY STPSLQDTRI PFLQMLQQSE EDSSSVLSFK  60
DPNFLALLSL QTLEKPWELE NYLPHEVPEF HSPIHSETNH YYHNPSLEAI SSQEYQLNPI  120
DNVNSRRKRR NNNNNLATSM TREKRKRRRT KPTKNTEEME TQRMTHIAVE RNRRRQMNVH  180
LNSLRSLIPS SYIQRGDQAS IVGGAIDFVK ILEQHLQSLE AQKITQQTDM CNSDNPSGIP  240
SSELRASTEE QTSKLRIDAT VIESHVNLKI QCLRKQGQLL RSIILLEKLR FTVLHLNITS  300
PSNASVSYSF NLKMEEDCNL GSADEITAAV RQIFDC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127148KRRNNNNNLATSMTREKRKRRR
2143148KRKRRR
3144148RKRRR
4144149RKRRRT
5144151RKRRRTKP
6162173RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001803m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6784341e-167AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397873.20.0transcription factor bHLH70 isoform X1
SwissprotO810371e-173BH070_ARATH; Transcription factor bHLH70
TrEMBLV4N2C00.0V4N2C0_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006397873.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-163bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]