PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HD-ZIP

Protein Properties

Length: 249aa MW: 29407.6 Da PI: 4.7406

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10001600m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	8e-19	33	85	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le +Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k Thhalv10001600m 33 QRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 85 579*************************************************9 PP
2	HD-ZIP_I/II	120.9	6.5e-39	32	123	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++++ L+++y+ l+++ e+L+ke+++L +el++ Thhalv10001600m 32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEFNILRQNYNDLASQFESLKKEKQALVSELQR 123 68**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.19E-18	16	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.508	27	87	IPR001356	Homeobox domain
SMART	SM00389	1.0E-15	30	91	IPR001356	Homeobox domain
CDD	cd00086	3.85E-13	33	88	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-18	33	93	IPR009057	Homeodomain-like
Pfam	PF00046	3.5E-16	33	85	IPR001356	Homeobox domain
PRINTS	PR00031	7.4E-6	58	67	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	62	85	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.4E-6	67	83	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.3E-14	87	129	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTEGEEYSPI MMSADPFMSM KKMKKSNQKN NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV 60 QLARELGLQP RQVAIWFQNK RARWKSKQLE TEFNILRQNY NDLASQFESL KKEKQALVSE 120 LQRLNEAMQK TQEEERQCCG DQAVVALSST DHESEIEENP RREQEELRPE MEMCEKGHHD 180 HHDDGHNNNN NIKREYLGGF EEEADQLMNI VEPADSCLTS SDDWRGFRSD TNLLDQSSSN 240 YPWWDFWS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10001600m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352871	0.0	AK352871.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-L20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397859.1	0.0	homeobox-leucine zipper protein ATHB-7
Swissprot	P46897	1e-147	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	E4MWH4	0.0	E4MWH4_EUTHA; mRNA, clone: RTFL01-14-L20
TrEMBL	V4LAA5	0.0	V4LAA5_EUTSA; Uncharacterized protein
STRING	XP_006397859.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2498	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-116	homeobox 7

Link Out ? help Back to Top
Phytozome	Thhalv10001600m
Entrez Gene	18015762

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]