 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10001591m |
| Common Name | EUTSA_v10001591mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
GATA |
| Protein Properties |
Length: 261aa MW: 28634.8 Da PI: 8.29 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10001591m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 56.3 | 4.5e-18 | 174 | 208 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C++C + kTp+WR gp g+ktLCnaCG+++++ +l
Thhalv10001591m 174 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 208
*******************************9885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009416 | Biological Process | response to light stimulus |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MDVYGLSSPD NLLRIDDLLD FSNEDIFSAS SSTSTAATSS SSFPPPHNPN FLHHHLSSSA 60
DHSFLHDICV PSDDAAHLEW LSQFVDDSFA DFPANPLGGT MTSVKTETSF PGKPRSKRSR 120
APAAFAGTWS PLPESDQQIH VAGKFKPKKE QSGGGGGRHQ STTAETAEGG MRRCTHCASE 180
KTPQWRTGPL GPKTLCNACG VRFKSGRLVP EYRPASSPTF VLTQHSNSHR KVMELRRQKE 240
VMRQPSQVQL HHHHHHHPQF *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493590 | 0.0 | AB493590.1 Arabidopsis thaliana At2g45050 mRNA for hypothetical protein, partial cds, clone: RAAt2g45050. |
| GenBank | AK317134 | 0.0 | AK317134.1 Arabidopsis thaliana AT2G45050 mRNA, complete cds, clone: RAFL21-72-C19. |
| GenBank | BT000921 | 0.0 | BT000921.1 Arabidopsis thaliana clone C105099 putative GATA-type zinc finger transcription factor (At2g45050) mRNA, complete cds. |
| GenBank | Y13649 | 0.0 | Y13649.1 Arabidopsis thaliana mRNA for GATA transcription factor 2. |
