PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001538m
Common NameEUTSA_v10001538mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 342aa    MW: 38795.8 Da    PI: 5.3961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001538mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-05213235123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ Cgk+F++   L  H  +H
  Thhalv10001538m 213 FKCETCGKVFKSYQALGGHRASH 235
                      89***********9999998887 PP
2zf-C2H212.40.00047266288123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F++   L  H r+H
  Thhalv10001538m 266 HQCPICFRVFTSGQALGGHKRSH 288
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.53E-5327No hitNo description
PfamPF139120.0026427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889426IPR007087Zinc finger, C2H2
SMARTSM003550.067426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139122.2E-11212237IPR007087Zinc finger, C2H2
SuperFamilySSF576674.67E-9212288No hitNo description
SMARTSM003550.013213235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676213240IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
PfamPF139123.8E-10266288IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452266293IPR007087Zinc finger, C2H2
SMARTSM003550.08266288IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280268288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEKYKCRFCF KSFLNGRALG GHMRSHMLSL SAERELHELT GEEEGEEEER PSQLSDDVTE  60
SDASSSSDEE EEEHGNLGEF DHSKIKRLQM VDDEIEFEFA DVESETESSK INPTRRRSKR  120
TRKLGSFDFD FKKLKTSQPG ESVTEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKNK  180
STMTKQKAEE EEETDHECED YKSSKSRGGR GRFKCETCGK VFKSYQALGG HRASHKKNKT  240
CTTMTSTKTE QEKTEYEDGV TEKKIHQCPI CFRVFTSGQA LGGHKRSHGS SNIGSGRGLS  300
VNQIVRIDKE EEVLVKQRMI DLNLPAPNED DDSTSVVFDE C*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001538m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010812.10.0zinc finger protein ZAT4
SwissprotQ9SHD01e-145ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLV4N1Y90.0V4N1Y9_EUTSA; Uncharacterized protein
STRINGXP_006397693.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-122C2H2-like zinc finger protein