PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001488m
Common NameEUTSA_v10001488mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 390aa    MW: 42754.2 Da    PI: 9.6236
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001488mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.42.9e-2171162187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                      +W+ +e+ aLi+a+r+++ +l+rg+lk+++Weev++++     +   +++++qC++k+e+l+kry+ + ++ ++   ++  s++++f+++ea
  Thhalv10001488m  71 CWSLEETTALIDAYRDKWYALNRGNLKANHWEEVAEAVaancPDATPKKTAVQCRHKMEKLRKRYRTEIQRTRSVpVARFISSWVHFKRMEA 162
                      7**********************************9998877778889**************************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2170163No hitNo description
PROSITE profilePS500906.49372132IPR017877Myb-like domain
SMARTSM005951.3E-1579168IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSDPESPLNH DPIPDPSRVR IQSSPPLALL PPPPSSSALD NALEDPASAT DVKIASVPAT  60
SKSSRRLPPP CWSLEETTAL IDAYRDKWYA LNRGNLKANH WEEVAEAVAA NCPDATPKKT  120
AVQCRHKMEK LRKRYRTEIQ RTRSVPVARF ISSWVHFKRM EAMENRPETK QGNESGNEEE  180
DDGNYAARYQ FSGGGSVART TPRFFNRNGT AGSGGGGGSS SGGIRIRIPT GVSIAQSGPR  240
FPGKIDPKYT ASPSLGVSGN PRPGRLGAGS SYGARVVRIP EGGEDRAGKR GREMMMMKTE  300
EDDDDDPMVE IASAIKLLGD TLLRTEQTKM EMTREIEAMR MEMEMKRTKM ILESQQRIVE  360
AFAKSMSENV EETKKKKARR ISSSLATDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001488m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397652.10.0trihelix transcription factor ASIL2
TrEMBLV4KMI10.0V4KMI1_EUTSA; Uncharacterized protein
STRINGXP_006397652.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-154Trihelix family protein